JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPI_chr19_34360196_34407413	0/0	t0029	2450	1	0	0	0	0	1	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0030	2449	1	0	0	1	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0031	2449	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPI_chr19_34360196_34407413	0/0	t0032	2450	1	1	0	0	0	0	copy fasta	GPI	chr19	34360196	34407413
GPKOW_chrX_49108407_49128735	1/1	t0001	228	276	74	48	111	11	30	copy fasta	GPKOW	chrX	49108407	49128735
GPLD1_chr6_24420832_24494578	0/0	t0001	3278	62	3	8	46	2	3	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/1	t0002	3269	51	3	14	24	2	7	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0003	3261	29	0	7	21	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0004	3278	23	4	2	14	0	3	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0005	3272	13	2	6	0	1	4	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0006	3278	11	2	2	4	0	3	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0007	3273	11	9	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0008	3269	8	6	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0009	3261	7	0	2	2	0	3	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0010	3278	6	0	0	5	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0011	3279	6	0	0	5	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0012	3272	6	0	6	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0013	3268	6	6	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0014	3281	5	5	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0015	3278	5	0	0	4	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0016	3268	4	3	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0017	3277	4	1	3	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0018	3279	4	1	0	2	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0019	3268	4	3	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0020	3270	4	0	0	2	0	2	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0021	3270	3	0	0	3	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0022	3278	3	3	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0023	3278	3	0	0	3	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0024	3272	3	3	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0025	3276	2	1	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0026	3274	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0027	3275	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0028	3281	2	2	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0029	3256	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0030	3278	2	0	0	2	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0031	3273	2	0	0	0	0	2	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0032	3268	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0033	3269	2	0	2	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0034	3267	2	1	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0035	3277	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0036	3276	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0037	3277	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0038	3270	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0039	3278	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0040	3279	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0041	3276	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0042	3278	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0043	3269	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0044	3262	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0045	3276	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578