JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPLD1_chr6_24420832_24494578	0/0	t0046	3269	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0047	3273	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0048	3278	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0049	3278	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0050	3277	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0051	3277	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0052	3269	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0053	3268	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0054	3269	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0055	3278	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0056	3268	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0057	3271	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0058	3272	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0059	3269	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0060	3274	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0061	3268	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0062	3268	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0063	3267	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0064	3268	1	0	0	0	1	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0065	3268	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0066	3271	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0067	3270	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0068	3261	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0069	3280	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0070	3271	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0071	3272	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0072	3278	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0073	3278	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0074	3278	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0075	3278	1	0	0	0	0	1	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0076	3278	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0077	3278	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	1/0	t0078	3268	1	0	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0079	3278	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0080	3281	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0081	3269	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0082	3277	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0083	3273	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0084	3267	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0085	3270	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0086	3270	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0087	3271	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0088	3278	1	1	0	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0089	3261	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0090	3274	1	0	0	1	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPLD1_chr6_24420832_24494578	0/0	t0091	3278	1	0	1	0	0	0	copy fasta	GPLD1	chr6	24420832	24494578
GPM6A_chr4_175627937_175817264	0/1	t0001	2006	114	23	25	42	1	22	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	1/0	t0002	2006	73	39	11	20	1	1	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0003	2006	57	4	21	23	3	6	copy fasta	GPM6A	chr4	175627937	175817264
GPM6A_chr4_175627937_175817264	0/0	t0004	2006	9	7	2	0	0	0	copy fasta	GPM6A	chr4	175627937	175817264