JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GSTZ1_chr14_77316036_77336597	0/0	t0002	536	18	1	3	10	3	1	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0003	536	3	0	0	0	3	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0004	536	1	0	0	0	0	1	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0005	536	1	1	0	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0006	536	1	0	0	0	1	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0007	536	1	0	0	1	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	t0008	536	1	0	0	0	0	1	copy fasta	GSTZ1	chr14	77316036	77336597
GSX1_chr13_27787483_27799768	0/0	t0001	1029	429	90	78	193	18	50	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0002	1029	2	1	1	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0003	1029	2	0	0	2	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0004	1029	2	0	0	2	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0005	1029	2	0	2	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0006	1029	1	1	0	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0007	1029	1	0	0	1	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX1_chr13_27787483_27799768	0/0	t0008	1029	1	0	1	0	0	0	copy fasta	GSX1	chr13	27787483	27799768
GSX2_chr4_54095163_54107498	1/1	t0001	759	299	67	54	140	10	26	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	t0002	759	70	23	12	14	6	15	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	t0003	759	1	0	0	0	0	1	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	t0004	759	1	0	0	1	0	0	copy fasta	GSX2	chr4	54095163	54107498
GSX2_chr4_54095163_54107498	0/0	t0005	759	1	0	0	1	0	0	copy fasta	GSX2	chr4	54095163	54107498
GTDC1_chr2_143933068_144337512	0/0	t0001	9209	35	14	3	8	1	9	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0002	9208	12	2	1	6	2	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0003	9208	7	7	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0004	9207	4	1	0	3	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0005	9210	4	3	0	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0006	9209	4	0	2	0	1	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0007	9198	4	0	2	0	0	2	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0008	9214	4	4	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0009	9209	3	3	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0010	9209	3	0	0	3	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0011	9199	3	0	1	2	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0012	9208	2	0	0	0	0	2	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0013	9208	2	1	1	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0014	9209	2	2	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0015	9211	2	0	1	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0016	9198	2	0	1	1	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0017	9198	2	0	0	2	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0018	9208	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0019	9208	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0020	9198	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0021	9198	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	1/0	t0022	9209	1	0	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0023	9209	1	0	0	0	0	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0024	9208	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0025	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0026	9209	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0027	9209	1	0	1	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0028	9198	1	1	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/0	t0029	9209	1	0	0	0	0	1	copy fasta	GTDC1	chr2	143933068	144337512
GTDC1_chr2_143933068_144337512	0/1	t0030	9208	1	0	0	0	0	0	copy fasta	GTDC1	chr2	143933068	144337512