JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTF3C6_chr6_110953706_110972872	1/1	t0001	147	342	83	69	138	10	40	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	t0002	147	2	2	0	0	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	t0003	147	1	1	0	0	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTF3C6_chr6_110953706_110972872	0/0	t0004	147	1	0	1	0	0	0	copy fasta	GTF3C6	chr6	110953706	110972872
GTPBP10_chr7_90341716_90396453	0/1	t0001	6330	135	11	34	65	4	20	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0002	6332	40	6	9	17	3	5	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0003	6338	35	4	3	25	0	3	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0004	6332	30	28	2	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0005	6332	24	0	2	21	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0006	6339	12	0	8	0	3	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0007	6330	12	0	2	6	0	4	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0008	6330	8	7	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0009	6343	6	5	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0010	6330	5	0	1	3	1	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0011	6330	5	5	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0012	6343	4	4	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0013	6329	4	0	2	1	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0014	6331	4	4	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0015	6333	3	3	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0016	6329	3	0	0	3	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0017	6329	3	0	2	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0018	6339	3	0	2	0	1	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0019	6338	2	0	0	2	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0020	6330	2	0	0	2	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0021	6332	2	2	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0022	6330	2	0	0	2	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0023	6330	2	0	1	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0024	6330	2	0	0	0	0	2	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0025	6330	2	0	0	2	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0026	6326	2	0	0	2	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0027	6336	2	2	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0028	6329	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0029	6333	1	0	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0030	6339	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0031	6338	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0032	6338	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0033	6338	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0034	6339	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0035	6338	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0036	6339	1	0	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0037	6335	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0038	6332	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0039	6332	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0040	6332	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0041	6333	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0042	6332	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0043	6332	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0044	6332	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0045	6333	1	0	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0046	6330	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453