JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GTPBP10_chr7_90341716_90396453	0/0	t0047	6330	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0048	6330	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0049	6330	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0050	6330	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0051	6330	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0052	6330	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0053	6330	1	0	1	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	1/0	t0054	6326	1	0	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0055	6332	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0056	6330	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0057	6337	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0058	6329	1	0	0	0	0	1	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0059	6299	1	0	0	1	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0060	6336	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0061	6336	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0062	6336	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP10_chr7_90341716_90396453	0/0	t0063	6336	1	1	0	0	0	0	copy fasta	GTPBP10	chr7	90341716	90396453
GTPBP1_chr22_38700944_38738587	0/0	t0001	2898	102	7	24	51	8	12	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0002	2904	50	11	2	30	1	6	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0003	2900	49	20	4	17	0	8	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0004	2885	32	0	0	30	0	2	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0005	2906	26	3	5	17	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0006	2902	19	8	2	8	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0007	2885	16	15	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	1/0	t0008	2896	13	0	4	6	1	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0009	2894	11	3	5	1	0	2	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/1	t0010	2908	7	0	1	3	1	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0011	2902	6	0	5	0	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0012	2892	4	4	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0013	2894	4	0	1	0	0	3	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0014	2885	4	0	0	4	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0015	2882	2	0	0	2	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0016	2889	2	0	0	2	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0017	2891	2	0	0	2	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0018	2900	2	2	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0019	2896	2	2	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0020	2887	2	2	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0021	2885	2	2	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0022	2900	2	2	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0023	2892	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0024	2892	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0025	2894	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0026	2894	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0027	2896	1	0	0	0	0	1	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0028	2898	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0029	2898	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0030	2900	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0031	2900	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0032	2900	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	t0033	2900	1	0	0	0	0	1	copy fasta	GTPBP1	chr22	38700944	38738587