Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMT_chr3_49411778_49427473	1/1	t0001	786	271	72	53	109	10	25	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	t0002	786	82	19	22	24	8	9	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	t0003	786	2	0	0	0	0	2	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	t0004	786	1	1	0	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	t0005	786	1	0	1	0	0	0	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	t0006	786	1	0	0	1	0	0	copy fasta	AMT	chr3	49411778	49427473
AMY1A_chr1_103650760_103669554	0/0	t0001	250	226	41	31	111	6	37	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	t0002	250	1	0	1	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	t0003	250	1	1	0	0	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	t0004	250	1	0	0	1	0	0	copy fasta	AMY1A	chr1	103650760	103669554
AMY1A_chr1_103650760_103669554	0/0	t0005	216	1	0	0	0	0	1	copy fasta	AMY1A	chr1	103650760	103669554
AMY1B_chr1_103682415_103701210	0/0	t0001	250	159	35	34	70	2	18	copy fasta	AMY1B	chr1	103682415	103701210
AMY1B_chr1_103682415_103701210	0/0	t0002	250	1	1	0	0	0	0	copy fasta	AMY1B	chr1	103682415	103701210
AMY1C_chr1_103744898_103763692	0/0	t0001	250	333	79	65	137	10	42	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	t0002	250	3	0	1	0	0	2	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	t0003	250	3	0	0	3	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY1C_chr1_103744898_103763692	0/0	t0004	250	1	1	0	0	0	0	copy fasta	AMY1C	chr1	103744898	103763692
AMY2A_chr1_103612427_103630780	1/1	t0001	49	259	65	53	114	9	16	copy fasta	AMY2A	chr1	103612427	103630780
AMY2A_chr1_103612427_103630780	0/0	t0002	49	53	5	9	26	1	12	copy fasta	AMY2A	chr1	103612427	103630780
AMY2B_chr1_103566589_103584534	1/1	t0001	49	408	86	72	188	14	46	copy fasta	AMY2B	chr1	103566589	103584534
AMZ1_chr7_2683202_2724683	0/0	t0001	7119	80	0	1	70	2	7	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0002	7119	34	5	7	16	2	4	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0003	7120	28	3	13	8	1	3	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0004	7123	23	2	17	0	1	3	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0005	7114	16	0	3	3	3	7	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0006	7120	13	10	3	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0007	7119	8	0	0	8	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	1/0	t0008	7119	6	0	1	2	0	2	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0009	7119	6	2	3	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0010	7114	5	1	1	2	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0011	7119	5	0	0	5	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0012	7119	5	0	0	5	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0013	7120	5	5	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0014	7114	5	0	0	5	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0015	7113	4	4	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0016	7119	4	0	4	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0017	7119	4	0	0	4	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0018	7120	4	1	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0019	7123	4	4	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0020	7119	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0021	7119	3	3	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0022	7114	3	0	1	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0023	7114	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0024	7119	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0025	7120	3	2	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0026	7121	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0027	7121	3	0	0	3	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0028	7114	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0029	7114	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	t0030	7118	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683