JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-DRA_chr6_32434887_32450046	0/0	t0008	471	1	0	0	0	0	1	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0009	471	1	1	0	0	0	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRB1_chr6_32573775_32594848	0/0	t0001	423	33	9	3	11	2	8	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0002	424	31	13	6	10	1	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0003	421	23	7	2	13	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0004	423	22	0	0	18	0	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0005	424	19	3	9	0	4	3	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0006	423	17	7	4	2	3	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0007	423	16	6	3	6	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0008	422	9	1	0	7	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0009	423	9	7	2	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0010	424	8	2	2	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0011	421	8	0	0	6	0	2	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0012	423	7	6	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0013	422	5	2	2	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	t0014	423	1	1	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB5_chr6_32512353_32535287	1/0	t0001	450	19	0	0	10	0	8	copy fasta	HLA-DRB5	chr6	32512353	32535287
HLA-E_chr6_30484509_30499194	0/1	t0001	1472	276	62	39	131	10	33	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0002	1472	108	14	32	53	4	5	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0003	1472	20	2	2	16	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0004	1472	18	4	2	12	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0005	1472	18	7	1	7	0	3	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0006	1472	4	0	0	4	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0007	1472	3	0	0	0	0	3	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0008	1472	2	2	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0009	1472	2	0	0	2	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0010	1472	1	0	1	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0011	1472	1	1	0	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0012	1504	1	0	0	1	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0013	1472	1	0	0	1	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0014	1472	1	0	1	0	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-E_chr6_30484509_30499194	0/0	t0015	1461	1	0	0	1	0	0	copy fasta	HLA-E	chr6	30484509	30499194
HLA-F_chr6_29718434_29732296	0/1	t0001	152	443	94	74	212	16	46	copy fasta	HLA-F	chr6	29718434	29732296
HLA-G_chr6_29822825_29836021	0/0	t0001	303	139	21	8	100	3	7	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/1	t0002	317	125	25	22	48	7	22	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0003	303	122	20	29	67	2	4	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0004	317	29	0	3	18	0	8	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0005	303	22	4	12	2	1	3	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0006	317	19	9	4	3	1	2	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0007	303	16	6	6	2	2	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0008	317	6	6	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	t0009	303	1	1	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLCS_chr21_36743626_36971669	0/0	t0001	5652	26	0	12	13	1	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	1/0	t0002	5652	17	3	3	5	1	4	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0003	5647	11	0	0	8	0	3	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0004	5649	10	3	6	0	1	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0005	5647	10	2	0	7	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0006	5647	10	4	2	3	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0007	5653	8	0	3	1	3	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0008	5653	7	1	0	0	0	6	copy fasta	HLCS	chr21	36743626	36971669