JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPCL1_chr1_12842377_12853720	0/0	t0011	253	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL2_chr1_13110488_13121854	0/1	t0001	275	182	36	29	98	8	10	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0002	275	157	9	36	88	5	19	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0003	275	63	28	6	12	1	16	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0004	275	8	7	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0005	275	3	0	0	3	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0006	275	3	2	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0007	275	2	2	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0008	275	2	1	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0009	275	1	0	0	0	0	1	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0010	275	1	0	1	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0011	275	1	1	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0012	275	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	t0013	275	1	0	0	1	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL3_chr1_13055769_13067878	0/0	t0001	1016	108	2	29	65	8	4	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	t0002	1016	5	0	1	2	2	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	t0003	1016	1	0	1	0	0	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	t0004	1016	1	0	1	0	0	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL3_chr1_13055769_13067878	0/0	t0005	1016	1	0	0	1	0	0	copy fasta	HNRNPCL3	chr1	13055769	13067878
HNRNPCL4_chr1_13158914_13170631	0/1	t0001	837	160	22	44	72	7	14	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0002	837	38	1	6	28	0	3	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0003	837	9	4	1	4	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0004	837	3	0	0	3	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0005	837	1	1	0	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0006	837	1	0	0	1	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0007	837	1	0	1	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0008	837	1	0	0	0	1	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPCL4_chr1_13158914_13170631	0/0	t0009	837	1	0	0	0	0	1	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPC_chr14_21204147_21274442	1/1	t0001	2284	233	54	38	105	8	26	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0002	2284	72	13	10	38	2	9	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0003	2284	58	20	18	13	2	5	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0004	2284	5	0	4	0	0	1	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0005	2284	2	2	0	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0006	2284	2	0	0	2	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0007	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0008	2284	1	1	0	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0009	2284	1	0	0	0	0	1	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0010	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0011	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0012	2284	1	0	0	0	1	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0013	2284	1	1	0	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0014	2284	1	0	0	0	1	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0015	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0016	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0017	2284	1	1	0	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0018	2284	1	0	1	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0019	2284	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0020	2284	1	0	0	0	0	1	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0021	2284	1	0	1	0	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	t0022	2284	1	0	0	0	0	1	copy fasta	HNRNPC	chr14	21204147	21274442