JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOXD3_chr2_176152307_176178098	0/0	t0003	1154	49	13	17	5	5	9	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0004	1152	9	1	0	8	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0005	1155	9	4	2	0	0	3	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0006	1151	6	6	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0007	1151	6	6	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0008	1151	4	1	0	3	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0009	1151	2	0	0	0	0	2	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0010	1151	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0011	1151	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0012	1151	1	0	0	0	0	1	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	t0013	1154	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD4_chr2_176146550_176158226	1/1	t0001	369	309	74	43	146	13	31	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	t0002	369	22	5	7	5	0	5	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	t0003	369	17	0	12	0	1	4	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	t0004	369	3	0	0	3	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	t0005	369	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD8_chr2_176124705_176137695	0/1	t0001	1746	177	33	53	57	9	24	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	1/0	t0002	1746	120	5	17	84	5	8	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0003	1746	83	38	3	31	0	11	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0004	1747	4	0	0	4	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0005	1746	3	0	0	1	0	2	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0006	1746	2	2	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0007	1746	1	0	0	0	0	1	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0008	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0009	1746	1	0	1	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0010	1746	1	0	0	1	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0011	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0012	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0013	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0014	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0015	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0016	1746	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	t0017	1747	1	1	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD9_chr2_176117719_176129937	0/1	t0001	813	218	58	50	79	8	22	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	1/0	t0002	813	168	18	21	104	4	20	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0003	813	5	0	0	5	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0004	810	4	4	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0005	813	3	3	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0006	813	1	0	1	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0007	813	1	0	1	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0008	813	1	1	0	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0009	813	1	0	1	0	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0010	813	1	0	0	1	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HOXD9_chr2_176117719_176129937	0/0	t0011	813	1	0	0	1	0	0	copy fasta	HOXD9	chr2	176117719	176129937
HP1BP3_chr1_20735266_20792307	0/1	t0001	4745	128	15	7	85	3	17	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	1/0	t0002	4745	80	14	24	23	5	13	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0003	4745	62	26	14	13	4	5	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0004	4745	35	2	2	27	0	4	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0005	4745	10	7	3	0	0	0	copy fasta	HP1BP3	chr1	20735266	20792307
HP1BP3_chr1_20735266_20792307	0/0	t0006	4745	9	0	8	0	1	0	copy fasta	HP1BP3	chr1	20735266	20792307