JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSDL1_chr16_84117141_84150177	0/0	t0029	2656	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0030	2658	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0031	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0032	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0033	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0034	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0035	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0036	2656	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0037	2656	1	0	1	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0038	2656	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0039	2656	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0040	2657	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0041	2656	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0042	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0043	2656	1	0	0	0	1	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL2_chr9_112375108_112477405	1/1	t0001	1918	185	46	31	86	7	13	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0002	1918	129	26	20	59	5	19	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0003	1918	13	3	6	4	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0004	1918	7	1	4	0	0	2	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0005	1917	7	0	0	7	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0006	1918	6	6	0	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0007	1918	3	0	0	3	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0008	1918	2	0	0	2	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0009	1918	2	0	0	0	0	2	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0010	1918	1	0	0	1	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0011	1918	1	1	0	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0012	1918	1	1	0	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0013	1918	1	0	1	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0014	1918	1	1	0	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0015	1906	1	0	0	1	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0016	1918	1	0	0	1	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0017	1918	1	1	0	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0018	1918	1	0	1	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0019	1884	1	0	0	1	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0020	1918	1	0	1	0	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSDL2_chr9_112375108_112477405	0/0	t0021	1917	1	0	0	1	0	0	copy fasta	HSDL2	chr9	112375108	112477405
HSF1_chr8_144286604_144319720	1/1	t0001	545	319	82	56	124	14	41	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0002	545	3	3	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0003	545	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0004	545	1	0	0	1	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0005	545	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0006	545	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0007	545	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0008	545	1	0	0	0	0	1	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0009	545	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF1_chr8_144286604_144319720	0/0	t0010	545	1	1	0	0	0	0	copy fasta	HSF1	chr8	144286604	144319720
HSF2BP_chr21_43524186_43664488	1/1	t0001	896	2	0	0	0	0	0	copy fasta	HSF2BP	chr21	43524186	43664488
HSF2_chr6_122394652_122438119	0/0	t0001	986	181	37	40	79	6	19	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	1/0	t0002	986	139	30	19	78	4	7	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/1	t0003	998	55	11	10	26	3	4	copy fasta	HSF2	chr6	122394652	122438119