JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFI30_chr19_18168813_18183117	1/1	t0001	236	259	66	52	98	8	33	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0002	236	69	26	15	16	6	6	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0003	236	16	1	4	8	0	3	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0004	236	3	0	0	3	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0005	236	1	1	0	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0006	236	1	0	1	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	t0007	236	1	0	0	1	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI35_chr17_43001784_43019456	1/1	t0001	322	304	68	50	130	11	43	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	t0002	322	23	11	8	0	1	3	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	t0003	320	6	6	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	t0004	322	4	0	0	4	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	t0005	322	2	0	2	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	t0006	322	1	1	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI44L_chr1_78615448_78651145	0/0	t0001	4471	27	2	6	15	2	2	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/1	t0002	4471	24	3	10	6	1	3	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0003	4471	18	6	5	2	0	5	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0004	4482	18	0	0	18	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0005	4482	18	1	1	15	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0006	4621	15	0	6	6	0	3	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0007	4481	14	0	0	13	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0008	4469	13	13	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0009	4471	13	0	3	10	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0010	4471	9	9	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0011	4471	9	0	2	6	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0012	4471	8	1	6	0	1	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0013	4471	8	7	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0014	4471	7	0	0	7	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0015	4622	7	0	1	6	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0016	4471	7	0	6	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0017	4471	6	6	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0018	4456	5	1	1	0	3	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0019	4595	5	0	1	4	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0020	4624	5	0	0	4	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0021	4481	5	0	0	5	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0022	4470	5	5	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0023	4623	4	0	0	4	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0024	4626	4	0	0	4	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0025	4594	3	0	3	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0026	4620	3	0	0	2	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0027	4621	3	0	0	2	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0028	4622	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0029	4472	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0030	4471	3	2	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0031	4471	3	3	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0032	4471	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0033	4471	3	0	3	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0034	4482	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0035	4482	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0036	4481	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0037	4470	3	0	0	3	0	0	copy fasta	IFI44L	chr1	78615448	78651145