JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFI44L_chr1_78615448_78651145	0/0	t0038	4456	2	1	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0039	4594	2	0	0	1	1	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0040	4620	2	0	2	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0041	4623	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0042	4594	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0043	4471	2	2	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0044	4472	2	0	0	0	2	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0045	4470	2	0	0	0	0	2	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0046	4471	2	0	2	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0047	4471	2	0	2	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0048	4470	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0049	4483	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0050	4482	2	0	0	1	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0051	4482	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0052	4483	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0053	4481	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0054	4482	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0055	4471	2	0	0	2	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0056	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0057	4456	1	0	0	0	1	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0058	4456	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0059	4588	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0060	4595	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0061	4622	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0062	4622	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0063	4473	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0064	4474	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0065	4596	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0066	4597	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0067	4599	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0068	4601	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0069	4601	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0070	4605	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0071	4614	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0072	4619	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0073	4620	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0074	4621	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0075	4621	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0076	4622	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0077	4622	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0078	4625	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0079	4473	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0080	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0081	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0082	4473	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0083	4620	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0084	4621	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0085	4627	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0086	4471	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0087	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145