JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFI44L_chr1_78615448_78651145	0/0	t0088	4471	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0089	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0090	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0091	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0092	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0093	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0094	4472	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0095	4472	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0096	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0097	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0098	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0099	4472	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0100	4472	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0101	4472	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0102	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0103	4472	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0104	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0105	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0106	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0107	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0108	4448	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0109	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0110	4471	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0111	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0112	4471	1	0	0	0	1	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0113	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0114	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0115	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0116	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0117	4471	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0118	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0119	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0120	4471	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0121	4471	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	1/0	t0122	4471	1	0	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0123	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0124	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0125	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0126	4469	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0127	4469	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0128	4469	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0129	4816	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0130	4469	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0131	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0132	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0133	4575	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0134	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0135	4482	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0136	4483	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0137	4483	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145