JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFI44L_chr1_78615448_78651145	0/0	t0138	4467	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0139	4482	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0140	4483	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0141	4483	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0142	4482	1	0	0	0	0	1	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0143	4482	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0144	4483	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0145	4482	1	0	1	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0146	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0147	4471	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0148	4471	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0149	4471	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0150	4472	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0151	4472	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0152	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0153	4470	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0154	4471	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0155	4470	1	1	0	0	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44L_chr1_78615448_78651145	0/0	t0156	4471	1	0	0	1	0	0	copy fasta	IFI44L	chr1	78615448	78651145
IFI44_chr1_78644831_78669073	1/1	t0001	348	392	96	59	173	16	46	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	t0002	348	54	3	9	38	0	4	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	t0003	348	1	1	0	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	t0004	348	1	0	0	1	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI6_chr1_27661064_27677192	0/1	t0001	422	266	37	54	114	18	42	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0002	423	35	19	4	8	0	4	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0003	421	19	7	3	9	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0004	422	12	12	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0005	423	12	12	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	1/0	t0006	420	4	2	0	1	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0007	421	4	4	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0008	420	3	2	1	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	t0009	408	1	1	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFIH1_chr2_162262074_162323684	1/1	t0001	504	179	43	42	62	10	20	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	t0002	504	22	20	2	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	t0003	504	9	9	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	t0004	504	7	5	2	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	t0005	504	2	2	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	t0006	504	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIT1B_chr10_89373056_89390205	0/1	t0001	548	247	45	36	135	7	23	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	1/0	t0002	548	115	7	35	44	8	20	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0003	548	27	11	4	11	1	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0004	548	18	17	1	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0005	548	15	14	1	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0006	548	11	0	1	10	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0007	534	6	0	0	6	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	t0008	548	1	0	0	0	0	1	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1_chr10_89387623_89411487	1/0	t0001	2866	113	6	35	43	6	22	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0002	2842	102	5	10	72	3	12	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/1	t0003	2865	85	24	14	32	4	10	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0004	2866	21	0	2	19	0	0	copy fasta	IFIT1	chr10	89387623	89411487