JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFIT5_chr10_89409568_89425997	0/0	t0028	2581	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0029	2581	1	0	0	0	0	1	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0030	2574	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0031	2574	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0032	2579	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0033	2610	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFITM10_chr11_1727406_1755595	1/0	t0001	3028	234	36	46	113	11	27	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0002	3028	90	39	14	29	1	7	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/1	t0003	3028	25	2	3	17	0	2	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0004	3028	17	1	9	1	1	5	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0005	3028	10	10	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0006	3028	5	0	0	5	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0007	3028	4	0	0	4	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0008	3028	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0009	3028	2	1	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0010	3028	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0011	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0012	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0013	3028	1	0	1	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0014	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0015	3028	1	0	0	0	1	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0016	3028	1	0	1	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0017	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0018	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0019	3028	1	0	0	1	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0020	3028	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0021	3028	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0022	3028	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0023	3028	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0024	3028	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	t0025	3028	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM1_chr11_309040_320272	1/1	t0001	291	34	6	16	0	6	4	copy fasta	IFITM1	chr11	309040	320272
IFITM2_chr11_302816_314395	0/0	t0001	608	16	1	9	0	4	2	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0002	608	6	0	3	0	2	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	1/0	t0003	608	3	0	1	0	1	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0004	608	3	0	1	0	1	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0005	608	2	0	2	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0006	608	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0007	608	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	t0008	608	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM3_chr11_314676_325860	0/0	t0001	210	20	1	11	0	5	3	copy fasta	IFITM3	chr11	314676	325860
IFITM3_chr11_314676_325860	1/0	t0002	210	11	3	3	0	3	1	copy fasta	IFITM3	chr11	314676	325860
IFITM5_chr11_293200_304526	1/1	t0001	338	274	63	61	107	16	25	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0002	338	94	9	13	65	0	7	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0003	338	34	17	2	6	0	9	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0004	338	15	0	0	11	0	4	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0005	337	3	3	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0006	338	3	3	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0007	338	3	1	0	0	0	2	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0008	338	2	1	1	0	0	0	copy fasta	IFITM5	chr11	293200	304526