JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPO8_chr12_30623988_30700869	0/0	t0010	2095	4	4	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0011	2095	3	0	0	3	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0012	2095	2	0	0	2	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0013	2095	2	2	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/1	t0014	2093	1	0	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0015	2093	1	0	0	1	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0016	2095	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0017	2095	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO8_chr12_30623988_30700869	0/0	t0018	2095	1	1	0	0	0	0	copy fasta	IPO8	chr12	30623988	30700869
IPO9_chr1_201824157_201889291	0/0	t0001	8279	31	2	11	8	3	7	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0002	8281	25	0	0	23	0	2	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0003	8296	24	2	7	8	3	4	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0004	8296	20	0	1	18	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0005	8282	19	0	8	10	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0006	8301	19	1	7	8	0	3	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0007	8297	17	0	0	17	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/1	t0008	8285	13	1	4	3	4	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0009	8297	12	0	1	11	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0010	8283	8	0	6	0	0	2	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0011	8298	7	7	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0012	8281	7	7	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0013	8280	6	6	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0014	8282	6	0	0	5	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0015	8286	6	0	3	1	1	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0016	8281	5	5	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0017	8298	5	0	1	3	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0018	8298	5	0	0	3	0	2	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0019	8299	5	1	2	0	2	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0020	8282	4	0	1	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0021	8284	4	1	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0022	8297	4	4	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0023	8298	4	0	1	2	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0024	8282	4	4	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0025	8300	4	2	1	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0026	8280	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0027	8279	3	0	2	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0028	8283	3	0	0	2	1	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0029	8278	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0030	8290	3	3	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0031	8296	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0032	8302	3	0	0	3	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0033	8282	3	2	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0034	8297	3	0	0	0	0	3	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0035	8280	2	0	0	0	1	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0036	8281	2	0	0	2	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0037	8280	2	1	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0038	8279	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0039	8284	2	0	0	1	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0040	8298	2	0	1	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0041	8295	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291