JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPO9_chr1_201824157_201889291	0/0	t0042	8283	2	0	1	0	1	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0043	8283	2	1	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0044	8298	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0045	8282	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0046	8299	2	1	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0047	8295	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0048	8297	2	0	0	2	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0049	8298	2	0	0	2	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0050	8283	2	2	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0051	8296	2	0	2	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0052	8296	2	0	0	0	0	2	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0053	8295	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0054	8301	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0055	8301	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0056	8296	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0057	8280	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0058	8281	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0059	8280	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0060	8279	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0061	8279	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0062	8280	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0063	8279	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0064	8280	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0065	8279	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0066	8279	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0067	8291	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0068	8295	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0069	8283	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0070	8284	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0071	8282	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0072	8281	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0073	8282	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0074	8282	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0075	8281	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0076	8284	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0077	8284	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0078	8283	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0079	8284	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0080	8284	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0081	8283	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0082	8278	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0083	8299	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0084	8298	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0085	8299	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0086	8297	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0087	8297	1	0	0	0	1	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0088	8284	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0089	8297	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0090	8297	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0091	8296	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291