JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IPO9_chr1_201824157_201889291	0/0	t0092	8298	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0093	8297	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0094	8297	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0095	8296	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0096	8282	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0097	8300	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0098	8297	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0099	8283	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0100	8291	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0101	8295	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0102	8294	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0103	8296	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0104	8297	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0105	8295	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0106	8296	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0107	8284	1	0	0	0	1	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	1/0	t0108	8291	1	0	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0109	8296	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0110	8282	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0111	8281	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0112	8297	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0113	8302	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0114	8303	1	0	0	1	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0115	8301	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0116	8295	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0117	8295	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0118	8303	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0119	8282	1	1	0	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0120	8297	1	0	1	0	0	0	copy fasta	IPO9	chr1	201824157	201889291
IPO9_chr1_201824157_201889291	0/0	t0121	8298	1	0	0	0	0	1	copy fasta	IPO9	chr1	201824157	201889291
IPPK_chr9_92608183_92675131	1/1	t0001	2793	277	62	54	122	15	22	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0002	2793	22	0	3	13	1	5	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0003	2793	9	3	1	0	0	5	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0004	2793	7	1	3	0	0	3	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0005	2793	7	6	1	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0006	2793	3	3	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0007	2793	3	3	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0008	2793	2	0	0	2	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0009	2793	2	0	1	0	0	1	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0010	2793	2	0	0	2	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0011	2793	1	1	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0012	2793	1	1	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0013	2793	1	0	1	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0014	2793	1	0	1	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0015	2793	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0016	2793	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0017	2793	1	0	1	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0018	2793	1	1	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0019	2793	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	t0020	2793	1	1	0	0	0	0	copy fasta	IPPK	chr9	92608183	92675131