JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB3_chr17_47248827_47318743	0/0	t0028	3576	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0029	3575	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0030	3575	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0031	3575	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0032	3575	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0033	3575	1	0	0	0	1	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0034	3576	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB4_chr17_75716459_75762818	0/1	t0001	428	223	46	47	92	11	26	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	1/0	t0002	428	147	43	17	65	5	16	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	t0003	428	6	0	6	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	t0004	428	3	2	0	0	0	1	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	t0005	428	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	t0006	428	1	0	0	0	0	1	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	t0007	428	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB5_chr3_124756948_124892365	1/0	t0001	2041	119	20	17	67	6	8	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0002	2055	103	29	15	46	4	9	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0003	2059	42	2	8	29	1	2	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/1	t0004	2055	30	0	8	12	1	8	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0005	2059	12	0	3	4	2	3	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0006	2059	12	11	1	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0007	2041	9	6	3	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0008	2055	7	3	4	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0009	2063	4	4	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0010	2055	2	1	1	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0011	2055	2	0	0	0	0	2	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0012	2031	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0013	2063	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0014	2063	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0015	2055	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0016	2055	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0017	2055	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0018	2055	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0019	2059	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0020	2059	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	t0021	2055	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB6_chr2_160094671_160205272	0/0	t0001	2275	108	43	5	46	0	14	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0002	2274	71	1	10	53	2	5	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0003	2275	70	16	17	30	2	5	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	1/0	t0004	2275	64	6	15	23	6	13	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/1	t0005	2274	14	1	8	0	4	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0006	2274	5	0	5	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0007	2273	5	3	2	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0008	2275	5	5	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0009	2274	3	0	0	3	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0010	2275	2	2	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0011	2274	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0012	2275	1	0	0	0	0	1	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0013	2275	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0014	2275	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0015	2275	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272