JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB6_chr2_160094671_160205272	0/0	t0016	2275	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0017	2275	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0018	2275	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0019	2275	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0020	2275	1	1	0	0	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB6_chr2_160094671_160205272	0/0	t0021	2275	1	0	0	1	0	0	copy fasta	ITGB6	chr2	160094671	160205272
ITGB7_chr12_53186323_53212251	1/1	t0001	410	368	65	67	178	10	46	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0002	410	11	11	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0003	410	9	8	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0004	410	4	4	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0005	410	2	2	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0006	410	2	2	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0007	410	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0008	410	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0009	410	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	t0010	410	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB8_chr7_20325900_20420754	0/1	t0001	6663	117	17	19	59	3	18	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0002	6664	45	2	4	32	0	7	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0003	6664	22	2	3	15	1	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0004	6664	20	6	5	0	2	7	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0005	6663	9	3	4	0	1	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0006	6662	8	7	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0007	6663	8	0	1	6	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0008	6663	7	0	3	4	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0009	6663	6	0	0	6	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0010	6665	5	0	1	2	1	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0011	6661	3	0	0	3	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0012	6664	3	0	3	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0013	6662	3	0	1	0	0	2	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0014	6664	3	2	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0015	6661	3	3	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	1/0	t0016	6665	3	0	2	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0017	6664	3	1	0	0	0	2	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0018	6664	2	0	2	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0019	6660	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0020	6665	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0021	6665	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0022	6661	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0023	6663	2	0	0	2	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0024	6663	2	0	0	2	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0025	6664	2	0	0	2	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0026	6663	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0027	6664	2	0	0	0	2	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0028	6661	2	2	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0029	6664	2	0	2	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0030	6664	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0031	6661	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0032	6664	1	0	0	0	1	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0033	6664	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0034	6665	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754