Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANO3_chr11_26327130_26668289	0/0	t0018	2993	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0019	2993	1	0	0	0	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0020	2993	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0021	2991	1	0	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0022	2991	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0023	2992	1	0	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0024	2992	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0025	2992	1	0	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0026	2981	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0027	2992	1	0	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0028	3003	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0029	2992	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0030	2992	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO4_chr12_100789776_101133629	1/1	t0001	1166	158	32	40	60	11	13	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0002	1166	31	5	3	19	0	4	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0003	1166	22	20	2	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0004	1170	8	8	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0005	1166	5	5	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0006	1166	3	3	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0007	1166	2	2	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0008	1166	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0009	1166	1	0	1	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0010	1166	1	1	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0011	1166	1	0	0	0	1	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0012	1166	1	1	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0013	1166	1	0	0	0	0	1	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	t0014	1166	1	1	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO5_chr11_22188085_22288357	0/0	t0001	4018	89	10	19	49	1	10	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0002	4000	65	1	9	50	2	3	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0003	4024	43	0	0	39	0	4	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0004	4024	33	9	7	13	0	4	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0005	4024	17	16	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0006	4024	10	9	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0007	4025	8	1	3	0	0	4	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0008	4025	6	5	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0009	4024	5	1	4	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0010	4024	5	5	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0011	4024	5	4	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0012	3994	4	0	0	3	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0013	4018	3	0	3	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0014	4018	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0015	4018	3	0	0	3	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0016	4024	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0017	4000	3	0	3	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0018	4024	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0019	4024	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0020	4025	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0021	4022	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0022	4018	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0023	4018	2	1	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357