Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANO5_chr11_22188085_22288357	0/0	t0024	4025	2	0	2	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0025	4023	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0026	4000	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/1	t0027	4000	2	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0028	4000	2	0	0	2	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	1/0	t0029	4001	2	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0030	4018	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0031	4000	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0032	4018	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0033	4020	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0034	4018	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0035	4018	1	0	0	0	1	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0036	4018	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0037	4018	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0038	4018	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0039	4018	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0040	4024	1	0	0	0	1	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0041	4019	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0042	4024	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0043	4024	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0044	4024	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0045	4024	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0046	4025	1	0	0	0	1	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0047	4025	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0048	4025	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0049	4020	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0050	4026	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0051	4025	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0052	4024	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0053	2639	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0054	4000	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0055	4000	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0056	4072	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0057	4000	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0058	4001	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0059	4018	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	t0060	4038	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO6_chr12_45211095_45437349	0/1	t0001	3266	90	26	20	37	0	6	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0002	3266	42	0	6	33	0	3	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0003	3266	34	0	4	29	0	1	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0004	3261	14	13	1	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	1/0	t0005	3266	9	8	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0006	3261	8	8	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0007	3262	8	0	0	8	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0008	3262	4	1	1	0	1	1	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0009	3259	4	4	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0010	3266	2	2	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0011	3267	2	0	0	2	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0012	3266	2	0	0	2	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0013	3266	2	2	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349