JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM4C_chr9_6752973_7180648	0/0	t0006	1168	3	2	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0007	1168	2	0	0	0	1	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0008	1168	2	2	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/1	t0009	1168	2	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0010	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0011	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0012	1168	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0013	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0014	1168	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0015	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0016	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0017	1168	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	t0018	1168	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4D_chr11_94968709_95004519	0/0	t0001	1381	349	74	51	179	11	34	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/1	t0002	1381	21	2	11	0	2	5	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	1/0	t0003	1380	17	14	0	1	0	1	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0004	1381	13	1	11	0	1	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0005	1381	5	0	1	0	0	4	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0006	1381	2	1	1	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0007	1381	1	0	0	1	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0008	1380	1	1	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0009	1381	1	0	1	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0010	1381	1	1	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	t0011	1381	1	0	0	1	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4E_chr11_95020258_95032596	1/1	t0001	819	232	56	52	78	13	31	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0002	819	186	8	25	132	5	16	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0003	819	21	18	3	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0004	819	14	11	0	0	0	3	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0005	817	5	4	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0006	819	2	2	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0007	819	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	t0008	6932	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM5A_chr12_275057_394320	0/0	t0001	5628	48	4	13	26	2	3	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	1/0	t0002	5629	32	0	11	11	1	8	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0003	5628	27	2	3	22	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0004	5626	19	11	4	2	0	2	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0005	5627	19	6	2	10	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0006	5629	17	0	2	14	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0007	5625	16	3	2	8	0	3	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0008	5627	13	4	3	5	1	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0009	5627	13	5	1	7	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0010	5628	12	1	3	8	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0011	5625	8	0	0	8	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0012	5626	7	2	1	3	1	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0013	5629	6	0	1	5	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0014	5625	6	5	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0015	5628	6	0	0	5	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0016	5629	5	3	0	0	1	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0017	5627	5	1	0	2	0	2	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0018	5627	4	4	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320