JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM5A_chr12_275057_394320	0/1	t0019	5630	4	0	1	1	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0020	5630	4	0	0	4	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0021	5627	4	0	2	0	2	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0022	5626	4	3	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0023	5629	3	0	3	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0024	5626	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0025	5626	3	0	0	3	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0026	5626	3	0	2	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0027	5626	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0028	5626	3	2	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0029	5625	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0030	5627	3	3	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0031	5629	2	0	0	0	0	2	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0032	5628	2	2	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0033	5624	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0034	5629	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0035	5628	2	0	0	2	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0036	5630	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0037	5630	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0038	5629	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0039	5629	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0040	5629	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0041	5629	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0042	5629	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0043	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0044	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0045	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0046	5628	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0047	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0048	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0049	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0050	5628	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0051	5628	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0052	5628	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0053	5628	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0054	5627	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0055	5627	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0056	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0057	5628	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0058	5627	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0059	5627	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0060	5627	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0061	5626	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0062	5626	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0063	5625	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0064	5625	1	0	1	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0065	5683	1	0	0	0	0	1	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0066	5625	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0067	5625	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0068	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320