JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KDM5A_chr12_275057_394320	0/0	t0069	5626	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0070	5627	1	0	0	1	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0071	5627	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5A_chr12_275057_394320	0/0	t0072	5628	1	1	0	0	0	0	copy fasta	KDM5A	chr12	275057	394320
KDM5B_chr1_202719495_202813421	0/1	t0001	4660	103	16	25	44	2	15	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	1/0	t0002	4658	69	18	12	26	1	11	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0003	4660	64	1	10	42	3	8	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0004	4659	52	1	7	42	0	2	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0005	4658	15	15	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0006	4656	12	1	1	7	1	2	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0007	4658	7	5	2	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0008	4660	5	0	0	5	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0009	4660	5	0	0	4	1	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0010	4660	4	0	3	0	1	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0011	4660	4	4	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0012	4657	4	4	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0013	4658	3	2	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0014	4658	3	3	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0015	4655	3	3	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0016	4658	2	2	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0017	4658	2	2	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0018	4660	2	0	2	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0019	4660	2	0	0	2	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0020	4660	2	0	0	2	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0021	4660	1	0	0	0	1	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0022	4655	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0023	4657	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0024	4658	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0025	4658	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0026	4660	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0027	4660	1	0	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0028	4660	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0029	4660	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0030	4660	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0031	4660	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0032	4660	1	0	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0033	4658	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0034	4658	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0035	4658	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0036	4660	1	0	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0037	4660	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0038	4656	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	t0039	4660	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5C_chrX_53187158_53230207	0/0	t0001	1129	142	21	21	76	2	22	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	1/0	t0002	1128	74	32	8	31	2	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/1	t0003	1130	15	13	1	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	t0004	1128	5	5	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	t0005	1112	2	0	1	0	1	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	t0006	1128	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	t0007	1128	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207