JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KICS2_chr12_64186080_64227296	0/0	t0020	2824	1	0	0	0	0	1	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0021	2824	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0022	2824	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0023	2822	1	0	1	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0024	2822	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0025	2822	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0026	2823	1	0	1	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0027	2823	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0028	2823	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0029	2822	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0030	2823	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0031	2818	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0032	2822	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0033	2822	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	t0034	2823	1	0	0	1	0	0	copy fasta	KICS2	chr12	64186080	64227296
KIDINS220_chr2_8723858_8842613	0/1	t0001	2033	289	66	54	117	18	33	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0002	2031	13	13	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	1/0	t0003	2033	11	2	2	6	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0004	2033	10	9	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0005	2033	2	2	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0006	2033	2	0	0	2	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0007	2033	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0008	2033	1	1	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0009	2033	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0010	2033	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0011	2033	1	0	0	0	0	1	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0012	2033	1	0	0	1	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	t0013	2033	1	0	1	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613
KIF11_chr10_92588130_92660395	0/0	t0001	1846	108	7	18	59	7	17	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0002	1846	82	48	10	18	1	5	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0003	1846	73	15	10	43	0	5	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	1/1	t0004	1846	51	7	15	11	6	10	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0005	1846	15	1	10	3	0	1	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0006	1846	11	8	3	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0007	1846	3	0	1	0	0	2	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0008	1846	3	3	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0009	1846	2	0	0	2	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0010	1846	1	0	1	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0011	1846	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0012	1846	1	1	0	0	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF11_chr10_92588130_92660395	0/0	t0013	1846	1	0	0	1	0	0	copy fasta	KIF11	chr10	92588130	92660395
KIF12_chr9_114086638_114104292	1/1	t0001	240	430	94	80	190	18	46	copy fasta	KIF12	chr9	114086638	114104292
KIF13A_chr6_17758693_17992635	1/1	t0001	590	200	70	30	71	8	19	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0002	590	64	3	10	43	3	5	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0003	590	13	13	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0004	590	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0005	590	1	0	0	0	1	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0006	590	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0007	590	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	t0008	590	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635