JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL11_chr17_41843518_41870423	0/0	t0009	5275	3	3	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0010	5276	2	0	0	2	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0011	5276	2	0	2	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0012	5276	2	0	0	2	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0013	5277	2	1	1	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0014	5278	2	1	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0015	5276	2	2	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0016	5276	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0017	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0018	5275	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0019	5276	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0020	5275	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0021	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0022	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0023	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0024	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0025	5276	1	0	1	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0026	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0027	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0028	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0029	5276	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0030	5276	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0031	5276	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0032	5276	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0033	5276	1	0	0	0	0	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0034	5276	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0035	5276	1	1	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0036	5275	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0037	5277	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0038	5277	1	0	0	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL12_chr1_202886120_202932234	0/1	t0001	1607	119	8	21	76	2	11	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0002	1604	79	34	16	17	4	8	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0003	1606	71	17	12	29	2	11	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0004	1604	34	0	8	20	0	6	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0005	1606	16	2	0	14	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	1/0	t0006	1605	15	11	3	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0007	1604	11	0	0	11	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0008	1606	3	3	0	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0009	1607	2	0	0	2	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0010	1606	1	0	1	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0011	1607	1	1	0	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0012	1602	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0013	1604	1	1	0	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0014	1605	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0015	1606	1	0	1	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0016	1607	1	1	0	0	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL12_chr1_202886120_202932234	0/0	t0017	1607	1	0	0	1	0	0	copy fasta	KLHL12	chr1	202886120	202932234
KLHL13_chrX_117892813_118121810	1/1	t0001	1423	180	48	25	76	7	22	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	t0002	1423	9	8	1	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	t0003	1424	7	7	0	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810