JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL6_chr3_183482551_183560706	0/0	t0100	4417	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0101	4417	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0102	4417	1	0	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0103	4417	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0104	4417	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0105	4417	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0106	4417	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0107	4418	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0108	4418	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0109	4417	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0110	4418	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0111	4418	1	0	0	0	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0112	4418	1	0	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0113	4419	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0114	4419	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0115	4419	1	0	0	0	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0116	4417	1	0	0	1	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0117	4430	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0118	4430	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0119	4430	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0120	4417	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0121	4418	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	1/0	t0122	4430	1	0	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0123	4417	1	0	0	0	1	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0124	4418	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL7_chr7_23100785_23182914	0/0	t0001	3860	80	22	18	28	4	8	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	1/1	t0002	3859	58	4	15	25	2	10	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0003	3860	21	0	0	17	1	3	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0004	3849	18	0	0	17	0	1	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0005	3856	12	2	4	2	0	4	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0006	3860	12	1	0	11	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0007	3864	11	10	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0008	3861	9	0	3	5	0	1	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0009	3860	8	0	4	0	2	2	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0010	3861	8	2	2	2	0	2	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0011	3860	7	0	2	5	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0012	3859	6	1	0	5	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0013	3859	5	5	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0014	3860	4	4	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0015	3861	4	4	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0016	3858	3	0	0	3	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0017	3859	3	1	2	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0018	3859	3	3	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0019	3861	3	3	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0020	3850	3	0	1	2	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0021	3860	3	3	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0022	3860	2	0	0	2	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0023	3860	2	0	0	2	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0024	3861	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0025	3860	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914