JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL7_chr7_23100785_23182914	0/0	t0026	3857	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0027	3870	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0028	3859	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0029	3861	2	2	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0030	3861	2	0	1	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0031	3860	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0032	3860	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0033	3861	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0034	3862	1	0	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0035	3861	1	0	0	0	1	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0036	3860	1	0	0	0	0	1	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0037	3856	1	0	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0038	3861	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0039	3861	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0040	3862	1	0	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0041	3861	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0042	3860	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0043	3859	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0044	3859	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0045	3858	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0046	3857	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0047	3857	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0048	3870	1	0	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0049	3860	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0050	3858	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0051	3860	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0052	3875	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0053	3860	1	0	1	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0054	3858	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0055	3858	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0056	3859	1	1	0	0	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0057	3848	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0058	3859	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL7_chr7_23100785_23182914	0/0	t0059	3859	1	0	0	1	0	0	copy fasta	KLHL7	chr7	23100785	23182914
KLHL8_chr4_87155103_87225618	0/1	t0001	3770	74	6	14	43	5	5	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0002	3769	68	1	14	45	2	6	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0003	3769	65	7	17	17	8	16	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0004	3773	55	21	2	26	2	4	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	1/0	t0005	3769	13	12	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0006	3772	11	11	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0007	3769	8	3	3	0	1	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0008	3770	5	1	3	0	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0009	3768	5	4	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0010	3770	4	0	4	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0011	3771	4	0	0	4	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0012	3773	4	3	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0013	3774	4	0	2	1	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0014	3768	3	3	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0015	3770	3	0	0	3	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0016	3771	3	0	0	3	0	0	copy fasta	KLHL8	chr4	87155103	87225618