JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCN8_chr9_136749386_136763243	0/0	t0005	426	1	0	0	1	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0006	426	1	0	1	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0007	426	1	0	1	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0008	426	1	0	0	1	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0009	426	1	0	0	1	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN9_chr9_135658309_135671961	1/0	t0001	1124	277	50	51	128	14	33	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/1	t0002	1124	35	2	8	17	2	5	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0003	1124	28	8	6	13	0	1	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0004	1124	18	0	0	18	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0005	1124	15	8	4	0	0	3	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0006	1124	11	10	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0007	1125	7	0	1	6	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0008	1124	3	3	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0009	1124	3	3	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0010	1124	3	0	0	0	0	3	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0011	1124	2	0	2	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0012	1124	2	0	0	2	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0013	1124	2	0	2	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0014	1124	2	2	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0015	1124	2	1	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0016	1124	2	0	0	2	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0017	1123	2	1	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0018	1124	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0019	1124	1	0	0	0	0	1	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0020	1124	1	1	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0021	1124	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0022	1125	1	0	0	0	0	1	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0023	1124	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0024	1124	1	0	0	0	0	1	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0025	1124	1	1	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0026	1124	1	1	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	t0027	1123	1	1	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCNL1_chr9_136977993_136990758	0/1	t0001	1342	351	84	67	147	12	40	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	1/0	t0002	1342	6	4	0	0	1	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0003	1342	4	0	2	2	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0004	1342	4	0	0	0	0	4	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0005	1342	3	0	1	0	0	2	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0006	1342	3	0	0	3	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0007	1342	2	2	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0008	1342	2	2	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0009	1342	1	0	0	1	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0010	1342	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0011	1342	1	0	0	0	1	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0012	1342	1	0	0	0	0	1	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0013	1342	1	0	0	1	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0014	1342	1	0	0	0	0	1	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	t0015	1342	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCORL_chr4_17836187_18026755	0/1	t0001	4705	72	8	17	33	1	12	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0002	4706	62	1	16	37	0	8	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0003	4705	38	5	11	15	2	5	copy fasta	LCORL	chr4	17836187	18026755