JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCORL_chr4_17836187_18026755	0/0	t0004	4705	20	4	0	10	0	6	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0005	4709	11	10	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0006	4706	9	7	1	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	1/0	t0007	4706	9	8	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0008	4706	8	8	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0009	4706	6	0	0	6	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0010	4705	6	4	0	2	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0011	4710	5	5	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0012	4706	5	0	0	5	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0013	4705	4	2	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0014	4709	3	3	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0015	4705	2	0	0	0	0	2	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0016	4705	2	0	0	2	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0017	4705	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0018	4705	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0019	4705	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0020	4706	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0021	4706	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0022	4705	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0023	4710	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0024	4706	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0025	4705	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0026	4705	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0027	4705	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0028	4705	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0029	4705	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0030	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0031	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0032	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0033	4706	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0034	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0035	4706	1	0	1	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0036	4706	1	0	0	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0037	4706	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0038	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0039	4706	1	0	0	0	1	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0040	4706	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	t0041	4705	1	0	0	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCOR_chr10_96827298_97000956	0/0	t0001	11328	35	1	8	22	0	4	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0002	11324	15	1	3	10	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	1/0	t0003	11328	15	1	0	12	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0004	11324	13	0	0	11	0	2	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0005	11328	6	2	1	2	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/1	t0006	11327	6	1	1	2	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0007	11325	5	1	0	3	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0008	11328	5	0	1	4	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0009	11342	5	0	1	3	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0010	11324	4	0	0	4	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0011	11323	4	1	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0012	11329	4	1	1	1	1	0	copy fasta	LCOR	chr10	96827298	97000956