JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHX1_chr17_36932475_36949612	0/0	t0030	2202	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0031	2198	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0032	2206	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0033	2208	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0034	2208	1	0	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0035	2203	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0036	2208	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0037	2205	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0038	2208	1	0	0	0	0	1	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0039	2209	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0040	2205	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0041	2208	1	0	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0042	2205	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0043	2206	1	0	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0044	2205	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0045	2203	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0046	2203	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0047	2209	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0048	2207	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0049	2206	1	0	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0050	2205	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0051	2204	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0052	2209	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0053	2206	1	0	0	0	1	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0054	2204	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0055	2203	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0056	2202	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0057	2202	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0058	2203	1	0	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0059	2207	1	0	0	0	1	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0060	2205	1	0	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0061	2205	1	1	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX2_chr9_124006768_124038301	1/1	t0001	1176	224	71	33	83	8	27	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0002	1177	66	5	14	42	0	5	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0003	1177	55	3	12	36	2	2	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0004	1176	31	14	7	4	2	4	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0005	1175	11	6	0	5	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0006	1177	2	0	0	2	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0007	1177	2	0	0	2	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0008	1176	2	0	0	2	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0009	1176	2	0	2	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0010	1176	1	0	1	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0011	1177	1	0	0	0	0	1	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0012	1177	1	0	0	1	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0013	1176	1	0	0	0	0	1	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0014	1176	1	1	0	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0015	1177	1	0	0	1	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX2_chr9_124006768_124038301	0/0	t0016	1176	1	0	1	0	0	0	copy fasta	LHX2	chr9	124006768	124038301
LHX3_chr9_136191250_136210128	1/1	t0001	1192	291	72	71	111	14	21	copy fasta	LHX3	chr9	136191250	136210128
LHX3_chr9_136191250_136210128	0/0	t0002	1191	51	0	5	40	1	5	copy fasta	LHX3	chr9	136191250	136210128