JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIAS_chr4_39454056_39484506	0/0	t0027	2454	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0028	2451	1	0	1	0	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAS_chr4_39454056_39484506	0/0	t0029	2454	1	0	0	1	0	0	copy fasta	LIAS	chr4	39454056	39484506
LIAT1_chr17_405325_419666	1/1	t0001	570	428	97	79	187	16	47	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	t0002	570	3	0	1	0	0	2	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	t0003	570	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	t0004	570	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	t0005	570	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIFR_chr5_38469668_38561646	0/0	t0001	7261	99	7	24	51	5	12	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0002	7260	70	2	9	45	5	9	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0003	7260	44	1	1	42	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0004	7260	30	9	13	2	0	6	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0005	7254	15	6	3	6	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0006	7255	14	14	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0007	7260	6	0	4	2	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0008	7260	6	6	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0009	7260	5	2	1	0	0	2	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0010	7254	5	5	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0011	7260	4	0	0	0	0	4	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0012	7260	4	0	0	4	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0013	7261	4	0	0	4	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0014	7260	3	2	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0015	7255	3	3	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/1	t0016	7260	3	0	1	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0017	7254	3	2	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0018	7261	3	0	1	0	1	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0019	7261	2	0	2	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0020	7260	2	2	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0021	7260	2	2	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	1/0	t0022	7260	2	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0023	7261	2	0	0	1	1	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0024	7260	2	1	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0025	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0026	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0027	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0028	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0029	7261	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0030	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0031	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0032	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0033	7261	1	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0034	7261	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0035	7261	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0036	7256	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0037	7261	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0038	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0039	7261	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0040	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0041	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0042	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646