JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIFR_chr5_38469668_38561646	0/0	t0043	7244	1	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0044	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0045	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0046	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0047	7254	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0048	7255	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0049	7254	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0050	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0051	7260	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0052	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0053	7260	1	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0054	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0055	7260	1	0	0	0	0	1	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0056	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0057	7261	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0058	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0059	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0060	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0061	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0062	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0063	7260	1	0	0	1	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0064	7255	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	t0065	7260	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIF_chr22_30235453_30251759	0/1	t0001	3259	117	1	23	67	6	19	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0002	3263	84	14	11	55	1	3	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0003	3263	56	5	26	16	2	7	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0004	3263	44	10	5	15	4	10	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0005	3263	20	0	0	20	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0006	3263	19	15	3	0	0	1	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0007	3264	19	19	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0008	3263	7	7	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	1/0	t0009	3263	6	0	2	1	2	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0010	3264	6	5	1	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0011	3263	6	5	1	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0012	3263	6	6	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0013	3263	4	3	1	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0014	3259	4	0	3	0	1	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0015	3263	3	0	0	3	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0016	3263	2	2	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0017	3263	2	0	0	2	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0018	3259	2	0	0	2	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0019	3259	2	0	0	2	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0020	3263	2	2	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0021	3263	2	2	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0022	3263	1	0	0	0	0	1	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0023	3259	1	1	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0024	3263	1	0	0	0	0	1	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0025	3263	1	1	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0026	3263	1	0	0	1	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	t0027	3263	1	0	0	0	1	0	copy fasta	LIF	chr22	30235453	30251759