Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APEX1_chr14_20450226_20462767	0/0	t0003	497	1	0	1	0	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	t0004	497	1	0	0	0	0	1	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	t0005	497	1	0	0	0	1	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	t0006	497	1	0	0	1	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX2_chrX_54995363_55014057	1/1	t0001	1683	152	25	34	71	5	15	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0002	1683	95	18	21	43	4	9	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0003	1684	20	19	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0004	1684	13	5	2	5	0	1	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0005	1684	9	0	0	8	0	1	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0006	1683	2	0	0	2	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0007	1683	2	0	0	0	0	2	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0008	1684	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0009	1684	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0010	1683	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0011	1684	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0012	1679	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0013	1682	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0014	1685	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0015	1683	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0016	1683	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	t0017	1683	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APH1A_chr1_150260404_150274016	1/1	t0001	933	331	90	65	128	11	35	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0002	933	96	0	8	73	4	11	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0003	933	5	5	0	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0004	933	2	0	2	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0005	933	1	0	0	1	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0006	933	1	0	0	1	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0007	933	1	1	0	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0008	933	1	0	0	1	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0009	933	1	0	1	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	t0010	933	1	0	0	0	1	0	copy fasta	APH1A	chr1	150260404	150274016
APH1B_chr15_63272605_63314126	0/0	t0001	3365	102	54	5	28	1	14	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0002	3365	80	1	17	56	2	4	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0003	3365	69	6	13	37	4	9	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0004	3365	60	7	11	41	1	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0005	3365	31	8	15	0	2	6	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0006	3365	14	0	0	12	0	2	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0007	3354	11	0	8	0	1	2	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0008	3365	8	8	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0009	3365	5	3	2	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0010	3365	4	4	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0011	3365	4	0	0	3	0	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0012	3365	3	0	0	3	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0013	3365	3	0	0	3	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0014	3365	3	3	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0015	3365	2	2	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0016	3365	2	0	0	2	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0017	3365	2	0	0	0	2	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0018	3365	2	2	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	t0019	3365	1	1	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126