JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMD1_chr3_45589751_45691341	0/0	t0166	9437	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0167	9435	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0168	9422	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0169	9433	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0170	9432	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0171	9388	1	0	0	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0172	9375	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0173	9388	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0174	9389	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0175	9389	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0176	9388	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0177	9386	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0178	9388	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0179	9389	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0180	9375	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0181	9375	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0182	9375	1	0	0	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0183	9375	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0184	9375	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0185	9374	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0186	9375	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0187	9375	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0188	9386	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0189	9385	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0190	9375	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0191	9435	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0192	9433	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0193	9431	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0194	9386	1	0	0	0	1	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0195	9387	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0196	9386	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0197	9384	1	0	0	0	0	1	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0198	9382	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0199	9368	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0200	9366	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0201	9353	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0202	9353	1	0	0	1	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0203	9378	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0204	9458	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0205	9454	1	1	0	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0206	9452	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD1_chr3_45589751_45691341	0/0	t0207	9448	1	0	1	0	0	0	copy fasta	LIMD1	chr3	45589751	45691341
LIMD2_chr17_63690888_63705125	1/0	t0001	2809	268	33	47	149	8	30	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/1	t0002	2808	48	18	13	8	2	6	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0003	2810	14	13	1	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0004	2809	8	8	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0005	2806	6	1	4	0	1	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0006	2809	5	0	0	5	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0007	2809	5	0	0	5	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0008	2809	5	0	0	5	0	0	copy fasta	LIMD2	chr17	63690888	63705125