JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIMD2_chr17_63690888_63705125	0/0	t0009	2809	4	3	1	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0010	2809	4	4	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0011	2809	3	1	1	0	1	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0012	2808	3	3	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0013	2809	2	2	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0014	2809	2	1	1	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0015	2807	2	0	1	0	1	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0016	2809	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0017	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0018	2809	1	0	1	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0019	2810	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0020	2810	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0021	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0022	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0023	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0024	2808	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0025	2808	1	0	0	0	1	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0026	2808	1	1	0	0	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0027	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIMD2_chr17_63690888_63705125	0/0	t0028	2809	1	0	0	1	0	0	copy fasta	LIMD2	chr17	63690888	63705125
LIME1_chr20_63731664_63744103	0/0	t0001	270	257	87	62	66	9	33	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	1/1	t0002	270	128	2	18	89	4	13	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	t0003	270	5	0	0	5	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	t0004	279	3	3	0	0	0	0	copy fasta	LIME1	chr20	63731664	63744103
LIME1_chr20_63731664_63744103	0/0	t0005	270	1	0	0	0	1	0	copy fasta	LIME1	chr20	63731664	63744103
LIMK1_chr7_74078804_74127525	1/1	t0001	1412	218	73	36	79	9	19	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0002	1412	49	6	3	29	3	8	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0003	1401	9	1	2	5	0	1	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0004	1412	4	0	3	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0005	1412	3	1	2	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0006	1412	3	0	0	0	3	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0007	1412	3	0	2	0	1	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0008	1406	3	0	0	3	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0009	1402	2	0	0	0	0	2	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0010	1412	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0011	1412	1	0	1	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0012	1412	1	0	1	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0013	1412	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0014	1412	1	0	0	0	0	1	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0015	1412	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0016	1417	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	t0017	1412	1	0	0	0	0	1	copy fasta	LIMK1	chr7	74078804	74127525
LIMK2_chr22_31207298_31285080	0/1	t0001	1751	191	57	31	67	8	27	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0002	1751	73	5	11	56	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	1/0	t0003	1751	55	1	23	20	6	4	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0004	1751	13	12	1	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0005	1751	3	0	0	3	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0006	1751	2	0	0	2	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0007	1751	2	0	0	2	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	t0008	1751	2	1	0	0	0	1	copy fasta	LIMK2	chr22	31207298	31285080