JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LIX1_chr5_97086867_97147611	0/0	t0008	2918	5	3	2	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0009	2917	4	0	3	0	0	1	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0010	2916	4	0	1	0	2	1	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0011	2919	4	0	0	4	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0012	2920	3	0	1	2	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0013	2921	3	2	1	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0014	2920	2	2	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0015	2919	2	2	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0016	2917	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0017	2917	1	1	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0018	2919	1	1	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0019	2919	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0020	2919	1	1	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0021	2920	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0022	2920	1	0	0	0	0	1	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	t0023	2921	1	1	0	0	0	0	copy fasta	LIX1	chr5	97086867	97147611
LKAAEAR1_chr20_64078376_64089398	1/1	t0001	239	60	9	12	16	0	21	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	t0002	239	40	9	6	16	0	9	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	t0003	239	2	2	0	0	0	0	copy fasta	LKAAEAR1	chr20	64078376	64089398
LLCFC1_chr7_142934484_142945868	0/1	t0001	420	194	33	55	60	12	33	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	t0002	420	69	53	7	9	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	t0003	420	12	12	0	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	t0004	420	1	0	0	1	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	t0005	420	1	0	0	0	0	1	copy fasta	LLCFC1	chr7	142934484	142945868
LLGL1_chr17_18220635_18249875	0/0	t0001	1017	50	11	8	25	1	5	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0002	1018	49	9	7	31	1	1	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0003	1017	46	2	4	29	2	9	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0004	1020	31	8	11	9	1	2	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0005	1019	29	13	7	6	1	2	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0006	1019	29	1	8	16	0	4	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0007	1018	21	0	4	12	0	5	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/1	t0008	1017	18	1	1	12	0	3	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0009	1018	17	1	2	12	0	2	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0010	1017	10	4	1	5	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0011	1018	10	9	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0012	1024	8	6	2	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0013	1021	7	0	1	6	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0014	1017	6	0	2	0	0	4	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0015	1019	6	4	2	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0016	1019	5	0	1	3	0	1	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0017	1020	5	4	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0018	1016	4	0	3	1	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0019	1019	4	1	1	2	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0020	1018	4	0	0	4	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0021	1003	4	0	0	4	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0022	1021	4	1	1	2	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0023	1029	4	1	0	3	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0024	1018	3	0	1	2	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0025	1017	3	0	0	3	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	t0026	1020	3	0	0	1	0	2	copy fasta	LLGL1	chr17	18220635	18249875