JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRC3_chr21_44450510_44467196	0/0	t0037	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0038	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0039	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0040	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0041	5072	1	0	0	0	1	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0042	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0043	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0044	5072	1	0	0	0	0	1	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0045	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0046	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0047	5072	1	0	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0048	5072	1	0	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0049	5072	1	0	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0050	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0051	5072	1	0	1	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0052	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0053	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0054	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0055	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0056	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0057	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0058	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0059	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0060	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0061	5072	1	1	0	0	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0062	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC3_chr21_44450510_44467196	0/0	t0063	5072	1	0	0	1	0	0	copy fasta	LRRC3	chr21	44450510	44467196
LRRC40_chr1_70139805_70210579	0/1	t0001	1035	180	32	38	81	9	19	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	t0002	1037	131	23	24	63	0	21	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	t0003	1037	4	1	0	3	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	1/0	t0004	1035	4	0	2	0	1	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	t0005	1035	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC41_chr1_46272462_46308616	1/1	t0001	1698	275	81	62	101	11	18	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0002	1698	85	2	6	54	3	20	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0003	1698	5	2	0	2	0	1	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0004	1698	1	0	0	0	0	1	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0005	1698	1	0	0	1	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0006	1698	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0007	1698	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	t0008	1698	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC42_chr1_53941350_53973168	1/1	t0001	478	234	44	40	115	7	26	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	t0002	478	76	47	9	15	2	3	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	t0003	478	2	0	1	0	0	1	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	t0004	502	2	1	0	0	1	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	t0005	478	1	0	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	t0006	478	1	0	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC43_chr12_122178123_122208471	1/1	t0001	52	390	94	74	160	18	42	copy fasta	LRRC43	chr12	122178123	122208471
LRRC45_chr17_82018305_82036151	0/0	t0001	686	218	71	47	72	5	23	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	1/1	t0002	686	165	13	21	102	6	21	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	t0003	686	12	9	3	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151