JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRN4_chr20_6035546_6059060	0/0	t0012	713	1	0	0	0	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRTM1_chr2_80296878_80309752	1/1	t0001	1034	379	83	71	178	10	35	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0002	1033	11	4	4	0	1	2	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0003	1035	11	1	1	7	1	1	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0004	1034	7	1	0	4	0	2	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0005	1034	3	3	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0006	1034	2	0	0	2	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0007	1034	1	0	0	0	0	1	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0008	1034	1	1	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0009	1034	1	0	0	1	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0010	1033	1	0	0	0	0	1	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	t0011	1034	1	1	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM2_chr5_138863921_138880335	0/0	t0001	4516	66	6	11	42	3	4	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	1/0	t0002	4514	61	13	8	26	6	7	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0003	4518	35	5	7	15	1	7	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0004	4512	31	10	9	8	0	4	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/1	t0005	4503	22	4	7	2	3	5	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0006	4505	14	0	8	0	1	5	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0007	4504	13	4	2	6	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0008	4502	11	11	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0009	4512	9	0	0	9	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0010	4518	9	0	0	9	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0011	4510	6	1	1	3	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0012	4514	5	0	3	0	2	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0013	4502	5	5	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0014	4512	3	3	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0015	4510	3	3	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0016	4506	3	0	0	3	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0017	4517	3	0	3	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0018	4519	3	0	2	0	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0019	4509	3	2	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0020	4511	2	2	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0021	4507	2	1	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0022	4505	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0023	4516	2	0	1	0	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0024	4515	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0025	4514	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0026	4513	2	2	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0027	4508	2	0	1	0	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0028	4516	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0029	4514	2	0	0	2	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0030	4502	2	0	0	0	0	2	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0031	4503	2	0	1	0	0	1	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0032	4509	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0033	4514	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0034	4509	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0035	4517	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0036	4510	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0037	4509	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0038	4507	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335