Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	26045
ensemblid	ENSG00000146006.8
hgncid	19409
symbol	LRRTM2
name	leucine rich repeat transmembrane neuronal 2
refseq_nuc	NM_015564.3
refseq_prot	NP_056379.1
ensembl_nuc	ENST00000274711.7
ensembl_prot	ENSP00000274711.5
mane_status	MANE Select
chr	chr5
start	138868921
end	138875335
strand	-
ver	v1.2
region	chr5:138868921-138875335
region5000	chr5:138863921-138880335
regionname0	LRRTM2_chr5_138868921_138875335
regionname5000	LRRTM2_chr5_138863921_138880335

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	516	362	87	73	144	16	40	112	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0002	0/0	516	1	0	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0003	0/0	516	1	1	0	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1551	354	86	73	137	16	40	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0002	0/0	1551	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0003	0/0	1551	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0004	0/0	1551	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0005	0/0	1551	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0006	0/0	1551	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0007	0/0	1551	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
c0008	0/0	1551	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	4516	66	6	11	42	3	4	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0002	1/0	4514	61	13	8	26	6	7	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0003	0/0	4518	35	5	7	15	1	7	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0004	0/0	4512	31	10	9	8	0	4	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0005	0/1	4503	22	4	7	2	3	5	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0006	0/0	4505	14	0	8	0	1	5	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0007	0/0	4504	13	4	2	6	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0008	0/0	4502	11	11	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0009	0/0	4512	9	0	0	9	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0010	0/0	4518	9	0	0	9	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0011	0/0	4510	6	1	1	3	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0012	0/0	4514	5	0	3	0	2	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0013	0/0	4502	5	5	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0014	0/0	4512	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0015	0/0	4510	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0016	0/0	4506	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0017	0/0	4517	3	0	3	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0018	0/0	4519	3	0	2	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0019	0/0	4509	3	2	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0020	0/0	4511	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0021	0/0	4507	2	1	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0022	0/0	4505	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0023	0/0	4516	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0024	0/0	4515	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0025	0/0	4514	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0026	0/0	4513	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0027	0/0	4508	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0028	0/0	4516	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0029	0/0	4514	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0030	0/0	4502	2	0	0	0	0	2	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0031	0/0	4503	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0032	0/0	4509	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0033	0/0	4514	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0034	0/0	4509	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0035	0/0	4517	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0036	0/0	4510	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0037	0/0	4509	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0038	0/0	4507	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0039	0/0	4507	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0040	0/0	4505	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0041	0/0	4504	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0042	0/0	4503	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0043	0/0	4504	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0044	0/0	4526	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0045	0/0	4502	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0046	0/0	4516	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0047	0/0	4516	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0048	0/0	4515	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0049	0/0	4514	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0050	0/0	4512	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0051	0/0	4512	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0052	0/0	4512	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0053	0/0	4511	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0054	0/0	4512	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0055	0/0	4513	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0056	0/0	4512	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0057	0/0	4511	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0058	0/0	4512	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0059	0/0	4515	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0060	0/0	4516	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0061	0/0	4498	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0062	0/0	4502	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0063	0/0	4509	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0064	0/0	4501	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0065	0/0	4516	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
t0066	0/0	4510	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	63	6	11	39	3	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0002	1/0	61	13	8	26	6	7	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0003	0/0	35	5	7	15	1	7	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0004	0/0	29	10	9	6	0	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0005	0/1	22	4	7	2	3	5	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0006	0/0	13	4	2	6	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0007	0/0	13	0	8	0	1	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0008	0/0	9	9	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0009	0/0	9	0	0	9	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0010	0/0	8	0	0	8	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0011	0/0	5	0	3	0	2	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0012	0/0	5	1	1	2	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0013	0/0	5	5	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0014	0/0	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0015	0/0	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0016	0/0	3	0	3	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0017	0/0	3	0	2	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0018	0/0	3	2	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0019	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0020	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0021	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0022	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0023	0/0	2	1	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0024	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0025	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0026	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0027	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0028	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0029	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0030	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0031	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0032	0/0	2	0	0	0	0	2	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0033	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0034	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0035	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0036	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0037	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0038	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0039	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0040	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0041	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0042	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0043	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0044	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0045	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0046	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0047	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0048	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0049	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0050	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0051	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0052	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0053	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0054	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0055	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0056	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0057	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0058	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0059	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0060	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0061	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0062	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0063	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0064	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0065	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0066	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0067	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0068	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0069	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0070	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0071	0/0	1	0	0	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0072	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0073	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0074	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
g0075	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1551	354	86	73	137	16	40	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0002	0/0	1551	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0003	0/0	1551	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0004	0/0	1551	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0005	0/0	1551	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0008	0/0	1551	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0002c0007	0/0	1551	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0003c0006	0/0	1551	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	6066	65	6	11	41	3	4	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0002	1/0	6064	61	13	8	26	6	7	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0003	0/0	6068	35	5	7	15	1	7	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0004	0/0	6062	29	10	9	6	0	4	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0005	0/1	6053	22	4	7	2	3	5	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0006	0/0	6055	14	0	8	0	1	5	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0007	0/0	6054	13	4	2	6	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0008	0/0	6052	9	9	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0009	0/0	6062	8	0	0	8	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0010	0/0	6068	9	0	0	9	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0011	0/0	6060	5	1	1	2	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0012	0/0	6064	5	0	3	0	2	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0013	0/0	6052	5	5	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0014	0/0	6062	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0015	0/0	6060	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0016	0/0	6056	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0017	0/0	6067	3	0	3	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0018	0/0	6069	3	0	2	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0019	0/0	6059	3	2	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0020	0/0	6061	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0021	0/0	6057	2	1	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0022	0/0	6055	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0023	0/0	6066	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0024	0/0	6065	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0025	0/0	6064	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0026	0/0	6063	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0027	0/0	6058	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0028	0/0	6066	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0029	0/0	6064	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0030	0/0	6052	2	0	0	0	0	2	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0031	0/0	6053	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0032	0/0	6059	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0033	0/0	6064	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0034	0/0	6059	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0035	0/0	6067	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0036	0/0	6060	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0037	0/0	6059	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0038	0/0	6057	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0039	0/0	6057	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0040	0/0	6055	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0041	0/0	6054	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0042	0/0	6053	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0043	0/0	6054	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0044	0/0	6076	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0045	0/0	6052	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0046	0/0	6066	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0047	0/0	6066	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0048	0/0	6065	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0049	0/0	6064	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0050	0/0	6062	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0051	0/0	6062	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0052	0/0	6062	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0053	0/0	6061	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0054	0/0	6062	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0056	0/0	6062	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0057	0/0	6061	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0059	0/0	6065	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0060	0/0	6066	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0062	0/0	6052	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0063	0/0	6059	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0064	0/0	6051	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0065	0/0	6066	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0001t0066	0/0	6060	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0002t0009	0/0	6062	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0002t0055	0/0	6063	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0002t0058	0/0	6062	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0003t0004	0/0	6062	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0004t0008	0/0	6052	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0005t0001	0/0	6066	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0001c0008t0011	0/0	6060	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0002c0007t0061	0/0	6048	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335
a0003c0006t0008	0/0	6052	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	copy fasta	chr5	138863921	138880335

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	63	6	11	39	3	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0001g0020	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0002g0002	1/0	61	13	8	26	6	7	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0003g0003	0/0	35	5	7	15	1	7	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0004g0004	0/0	29	10	9	6	0	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0005g0005	0/1	22	4	7	2	3	5	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0006g0007	0/0	13	0	8	0	1	4	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0006g0071	0/0	1	0	0	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0007g0006	0/0	13	4	2	6	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0008g0008	0/0	9	9	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0009g0010	0/0	8	0	0	8	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0010g0009	0/0	9	0	0	9	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0011g0012	0/0	5	1	1	2	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0012g0011	0/0	5	0	3	0	2	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0013g0013	0/0	5	5	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0014g0014	0/0	3	3	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0015g0031	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0015g0045	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0016g0015	0/0	3	0	0	3	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0017g0016	0/0	3	0	3	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0018g0017	0/0	3	0	2	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0019g0018	0/0	3	2	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0020g0022	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0021g0023	0/0	2	1	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0022g0024	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0023g0025	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0024g0026	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0025g0027	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0026g0019	0/0	2	2	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0027g0028	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0028g0029	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0029g0030	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0030g0032	0/0	2	0	0	0	0	2	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0031g0033	0/0	2	0	1	0	0	1	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0032g0034	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0033g0042	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0034g0043	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0035g0044	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0036g0068	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0037g0046	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0038g0069	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0039g0047	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0040g0048	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0041g0049	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0042g0050	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0043g0051	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0044g0052	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0045g0053	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0046g0054	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0047g0055	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0048g0056	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0049g0070	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0050g0057	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0051g0058	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0052g0059	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0053g0060	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0054g0061	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0056g0062	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0057g0035	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0059g0063	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0060g0064	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0062g0065	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0063g0072	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0064g0073	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0065g0074	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0001t0066g0075	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0002t0009g0038	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0002t0055g0039	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0002t0058g0040	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0003t0004g0021	0/0	2	0	0	2	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0004t0008g0036	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0005t0001g0037	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0001c0008t0011g0067	0/0	1	0	0	1	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0002c0007t0061g0066	0/0	1	0	1	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
a0003c0006t0008g0041	0/0	1	1	0	0	0	0	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00099	hp2	a0001	c0001	t0003	g0003	EUR	GBR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00280	hp1	a0001	c0001	t0002	g0002	EUR	FIN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00280	hp2	a0001	c0001	t0002	g0002	EUR	FIN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00323	hp1	a0001	c0001	t0005	g0005	EUR	FIN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00323	hp2	a0001	c0001	t0002	g0002	EUR	FIN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00408	hp2	a0001	c0001	t0011	g0012	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00438	hp1	a0001	c0001	t0007	g0006	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00558	hp1	a0001	c0001	t0003	g0003	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00597	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00597	hp2	a0001	c0001	t0025	g0027	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00609	hp1	a0001	c0001	t0016	g0015	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00609	hp2	a0001	c0001	t0002	g0002	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00621	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00621	hp2	a0001	c0001	t0024	g0026	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00639	hp1	a0001	c0001	t0011	g0012	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00639	hp2	a0001	c0001	t0005	g0005	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00642	hp1	a0001	c0001	t0031	g0033	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00642	hp2	a0001	c0001	t0017	g0016	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00673	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00673	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00733	hp2	a0001	c0001	t0004	g0004	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00735	hp1	a0001	c0001	t0005	g0005	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00738	hp1	a0001	c0001	t0004	g0004	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00738	hp2	a0001	c0001	t0012	g0011	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00741	hp1	a0001	c0001	t0004	g0004	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG00741	hp2	a0002	c0007	t0061	g0066	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01069	hp1	a0001	c0001	t0002	g0002	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01070	hp1	a0001	c0001	t0012	g0011	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01070	hp2	a0001	c0001	t0006	g0007	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01071	hp1	a0001	c0001	t0002	g0002	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01071	hp2	a0001	c0001	t0006	g0007	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01074	hp1	a0001	c0001	t0005	g0005	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01074	hp2	a0001	c0001	t0003	g0003	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01081	hp1	a0001	c0001	t0006	g0007	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01081	hp2	a0001	c0001	t0003	g0003	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01099	hp1	a0001	c0001	t0004	g0004	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01099	hp2	a0001	c0001	t0057	g0035	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01106	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01109	hp1	a0001	c0001	t0052	g0059	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01109	hp2	a0001	c0001	t0021	g0023	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01167	hp1	a0001	c0001	t0007	g0006	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01167	hp2	a0001	c0001	t0054	g0061	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01168	hp1	a0001	c0001	t0004	g0004	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01168	hp2	a0001	c0001	t0005	g0005	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01169	hp1	a0001	c0001	t0053	g0060	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01169	hp2	a0001	c0001	t0005	g0005	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01192	hp1	a0001	c0001	t0002	g0002	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01192	hp2	a0001	c0001	t0012	g0011	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01243	hp1	a0001	c0001	t0019	g0018	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01243	hp2	a0001	c0001	t0007	g0006	AMR	PUR	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01256	hp1	a0001	c0001	t0003	g0003	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01257	hp1	a0001	c0001	t0004	g0004	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01257	hp2	a0001	c0001	t0003	g0003	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01258	hp1	a0001	c0001	t0003	g0003	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01261	hp1	a0001	c0001	t0017	g0016	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01261	hp2	a0001	c0001	t0064	g0073	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01346	hp1	a0001	c0001	t0017	g0016	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01346	hp2	a0001	c0001	t0005	g0005	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01361	hp1	a0001	c0001	t0006	g0007	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01361	hp2	a0001	c0001	t0004	g0004	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01433	hp1	a0001	c0001	t0018	g0017	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01433	hp2	a0001	c0001	t0005	g0005	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01515	hp1	a0001	c0001	t0012	g0011	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01515	hp2	a0001	c0001	t0005	g0005	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01516	hp1	a0001	c0001	t0002	g0002	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01516	hp2	a0001	c0001	t0005	g0005	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01517	hp1	a0001	c0001	t0012	g0011	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01517	hp2	a0001	c0001	t0002	g0002	EUR	IBS	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01884	hp1	a0001	c0001	t0002	g0002	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01884	hp2	a0001	c0001	t0005	g0005	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01891	hp1	a0001	c0001	t0066	g0075	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01891	hp2	a0001	c0001	t0002	g0002	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01934	hp1	a0001	c0001	t0023	g0025	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01934	hp2	a0001	c0001	t0027	g0028	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01943	hp1	a0001	c0001	t0004	g0004	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01943	hp2	a0001	c0001	t0006	g0007	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01975	hp2	a0001	c0001	t0006	g0007	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01978	hp1	a0001	c0001	t0006	g0007	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01978	hp2	a0001	c0001	t0063	g0072	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01981	hp1	a0001	c0001	t0018	g0017	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01981	hp2	a0001	c0001	t0006	g0007	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01993	hp2	a0001	c0001	t0039	g0047	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02004	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02004	hp2	a0001	c0001	t0003	g0003	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02015	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02015	hp2	a0001	c0001	t0004	g0004	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02040	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02040	hp2	a0001	c0001	t0003	g0003	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02074	hp1	a0001	c0001	t0022	g0024	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02129	hp1	a0001	c0001	t0007	g0006	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02132	hp1	a0001	c0001	t0025	g0027	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02132	hp2	a0001	c0001	t0003	g0003	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02145	hp1	a0001	c0001	t0003	g0003	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02145	hp2	a0001	c0001	t0004	g0004	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02257	hp1	a0001	c0001	t0008	g0008	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02257	hp2	a0001	c0001	t0002	g0002	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02258	hp1	a0001	c0001	t0033	g0042	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02258	hp2	a0001	c0001	t0005	g0005	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02273	hp1	a0001	c0001	t0004	g0004	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02273	hp2	a0001	c0001	t0002	g0002	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02280	hp1	a0001	c0001	t0002	g0002	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02280	hp2	a0001	c0001	t0032	g0034	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02293	hp1	a0001	c0001	t0002	g0002	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02451	hp1	a0001	c0001	t0004	g0004	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02451	hp2	a0003	c0006	t0008	g0041	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02572	hp1	a0001	c0001	t0014	g0014	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02572	hp2	a0001	c0001	t0007	g0006	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02602	hp1	a0001	c0001	t0003	g0003	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02602	hp2	a0001	c0001	t0005	g0005	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02615	hp2	a0001	c0001	t0003	g0003	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02622	hp1	a0001	c0001	t0004	g0004	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02622	hp2	a0001	c0001	t0008	g0008	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02630	hp1	a0001	c0001	t0004	g0004	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02630	hp2	a0001	c0001	t0038	g0069	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02647	hp1	a0001	c0001	t0014	g0014	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02647	hp2	a0001	c0001	t0013	g0013	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02698	hp1	a0001	c0001	t0005	g0005	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02698	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02717	hp1	a0001	c0001	t0007	g0006	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02717	hp2	a0001	c0001	t0002	g0002	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02723	hp1	a0001	c0001	t0003	g0003	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02723	hp2	a0001	c0001	t0015	g0045	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02735	hp1	a0001	c0001	t0006	g0071	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02735	hp2	a0001	c0001	t0027	g0028	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02738	hp1	a0001	c0001	t0018	g0017	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02738	hp2	a0001	c0001	t0031	g0033	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02809	hp1	a0001	c0001	t0004	g0004	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02809	hp2	a0001	c0001	t0036	g0068	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02818	hp1	a0001	c0001	t0041	g0049	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02818	hp2	a0001	c0001	t0035	g0044	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02886	hp1	a0001	c0001	t0013	g0013	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02886	hp2	a0001	c0001	t0013	g0013	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02895	hp1	a0001	c0001	t0013	g0013	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02895	hp2	a0001	c0001	t0045	g0053	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02965	hp1	a0001	c0001	t0004	g0004	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02965	hp2	a0001	c0001	t0007	g0006	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02970	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02970	hp2	a0001	c0001	t0008	g0008	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03041	hp1	a0001	c0001	t0056	g0062	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03041	hp2	a0001	c0001	t0002	g0002	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03098	hp1	a0001	c0001	t0002	g0002	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03098	hp2	a0001	c0001	t0002	g0002	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03130	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03130	hp2	a0001	c0001	t0004	g0004	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03139	hp1	a0001	c0001	t0008	g0008	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03139	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03195	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03195	hp2	a0001	c0001	t0019	g0018	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03209	hp1	a0001	c0001	t0008	g0008	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03209	hp2	a0001	c0001	t0004	g0004	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03225	hp1	a0001	c0001	t0002	g0002	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03225	hp2	a0001	c0001	t0015	g0031	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03239	hp1	a0001	c0001	t0030	g0032	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03239	hp2	a0001	c0001	t0004	g0004	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03453	hp1	a0001	c0001	t0008	g0008	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03453	hp2	a0001	c0001	t0013	g0013	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03486	hp1	a0001	c0001	t0019	g0018	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03486	hp2	a0001	c0001	t0008	g0008	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03490	hp1	a0001	c0001	t0007	g0006	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03490	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03491	hp1	a0001	c0001	t0030	g0032	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03491	hp2	a0001	c0001	t0005	g0005	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03492	hp1	a0001	c0001	t0005	g0005	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03492	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03516	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03516	hp2	a0001	c0001	t0040	g0048	AFR	ESN	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03540	hp1	a0001	c0001	t0015	g0031	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03540	hp2	a0001	c0001	t0021	g0023	AFR	GWD	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03579	hp1	a0001	c0001	t0004	g0004	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03579	hp2	a0001	c0001	t0008	g0008	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03654	hp1	a0001	c0001	t0005	g0005	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03669	hp1	a0001	c0001	t0003	g0003	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03704	hp1	a0001	c0001	t0004	g0004	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03704	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03710	hp1	a0001	c0001	t0006	g0007	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03710	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03831	hp1	a0001	c0001	t0003	g0003	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03831	hp2	a0001	c0001	t0004	g0004	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03834	hp1	a0001	c0001	t0004	g0004	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03834	hp2	a0001	c0001	t0011	g0012	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03927	hp1	a0001	c0001	t0003	g0003	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03927	hp2	a0001	c0001	t0023	g0025	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03942	hp2	a0001	c0001	t0006	g0007	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04115	hp1	a0001	c0001	t0002	g0002	SAS	STU	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04115	hp2	a0001	c0001	t0002	g0002	SAS	STU	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04184	hp1	a0001	c0001	t0003	g0003	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04184	hp2	a0001	c0001	t0006	g0007	SAS	BEB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04204	hp1	a0001	c0001	t0003	g0003	SAS	STU	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG04204	hp2	a0001	c0001	t0003	g0003	SAS	STU	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18522	hp1	a0001	c0001	t0026	g0019	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18522	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18612	hp1	a0001	c0001	t0002	g0002	EAS	CHB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18612	hp2	a0001	c0001	t0002	g0002	EAS	CHB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18747	hp1	a0001	c0001	t0007	g0006	EAS	CHB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18747	hp2	a0001	c0001	t0004	g0004	EAS	CHB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18906	hp1	a0001	c0001	t0020	g0022	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18906	hp2	a0001	c0001	t0011	g0012	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18939	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18939	hp2	a0001	c0001	t0007	g0006	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18940	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18940	hp2	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18942	hp1	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18942	hp2	a0001	c0001	t0024	g0026	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18944	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18944	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18945	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18946	hp1	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18946	hp2	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18948	hp1	a0001	c0001	t0051	g0058	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18948	hp2	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18949	hp2	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18954	hp2	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18961	hp1	a0001	c0001	t0005	g0005	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18961	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18962	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18962	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18963	hp1	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18963	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18965	hp1	a0001	c0003	t0004	g0021	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18965	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18968	hp1	a0001	c0001	t0044	g0052	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18971	hp2	a0001	c0001	t0011	g0012	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18973	hp1	a0001	c0001	t0001	g0020	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18973	hp2	a0001	c0001	t0046	g0054	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18974	hp1	a0001	c0001	t0005	g0005	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18975	hp2	a0001	c0005	t0001	g0037	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18979	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18980	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18980	hp2	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18983	hp1	a0001	c0001	t0007	g0006	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18983	hp2	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18986	hp1	a0001	c0003	t0004	g0021	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18986	hp2	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18989	hp1	a0001	c0002	t0055	g0039	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18993	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18993	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18994	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18994	hp2	a0001	c0001	t0022	g0024	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18995	hp2	a0001	c0001	t0050	g0057	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18998	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA18998	hp2	a0001	c0001	t0029	g0030	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19000	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19000	hp2	a0001	c0001	t0034	g0043	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19002	hp1	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19003	hp1	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19003	hp2	a0001	c0001	t0004	g0004	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19004	hp1	a0001	c0001	t0028	g0029	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19005	hp2	a0001	c0001	t0047	g0055	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19007	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19043	hp2	a0001	c0001	t0020	g0022	AFR	LWK	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19054	hp1	a0001	c0001	t0004	g0004	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19054	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19057	hp1	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19057	hp2	a0001	c0002	t0058	g0040	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19058	hp1	a0001	c0001	t0004	g0004	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19058	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19060	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19060	hp2	a0001	c0002	t0009	g0038	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19066	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19067	hp2	a0001	c0001	t0029	g0030	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19068	hp1	a0001	c0001	t0065	g0074	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19068	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19070	hp2	a0001	c0001	t0016	g0015	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19072	hp1	a0001	c0001	t0001	g0020	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19072	hp2	a0001	c0001	t0009	g0010	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19075	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19075	hp2	a0001	c0001	t0028	g0029	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19077	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19077	hp2	a0001	c0001	t0007	g0006	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19078	hp1	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19078	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19079	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19079	hp2	a0001	c0001	t0043	g0051	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19081	hp1	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19081	hp2	a0001	c0001	t0004	g0004	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19084	hp1	a0001	c0008	t0011	g0067	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19084	hp2	a0001	c0001	t0003	g0003	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19085	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19085	hp2	a0001	c0001	t0016	g0015	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19087	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19087	hp2	a0001	c0001	t0042	g0050	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19090	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19090	hp2	a0001	c0001	t0010	g0009	EAS	JPT	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19240	hp1	a0001	c0001	t0014	g0014	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA19240	hp2	a0001	c0001	t0037	g0046	AFR	YRI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20129	hp1	a0001	c0004	t0008	g0036	AFR	ASW	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20129	hp2	a0001	c0001	t0059	g0063	AFR	ASW	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20805	hp1	a0001	c0001	t0006	g0007	EUR	TSI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20805	hp2	a0001	c0001	t0002	g0002	EUR	TSI	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20905	hp1	a0001	c0001	t0006	g0007	SAS	GIH	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20905	hp2	a0001	c0001	t0002	g0002	SAS	GIH	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01123	hp1	a0001	c0001	t0003	g0003	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG01123	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02109	hp1	a0001	c0001	t0004	g0004	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02486	hp1	a0001	c0001	t0049	g0070	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02486	hp2	a0001	c0001	t0007	g0006	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02559	hp1	a0001	c0001	t0008	g0008	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG02559	hp2	a0001	c0001	t0048	g0056	AFR	ACB	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03471	hp1	a0001	c0001	t0062	g0065	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG03471	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG06807	hp1	a0001	c0001	t0003	g0003	AFR	USA	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
HG06807	hp2	a0001	c0001	t0005	g0005	AFR	USA	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20300	hp1	a0001	c0001	t0060	g0064	AFR	USA	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA20300	hp2	a0001	c0001	t0003	g0003	AFR	USA	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA21309	hp1	a0001	c0001	t0005	g0005	AFR	LWK	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
NA21309	hp2	a0001	c0001	t0026	g0019	AFR	LWK	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
homoSapiens_chm13v2	hp1	a0001	c0001	t0005	g0005	REF	REF	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0002	REF	REF	LRRTM2_chr5_138863921_138880335	LRRTM2	chr5	138863921	138880335

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr5:138873090	G G	T T	1	a0003 a0003	1	HG02451.hp2 HG02451.hp2	missense_variant	MODERATE	c.1471C>A c.1471C>A	p.His491Asn p.His491Asn	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1895/6064	1471/1551	491/516			chr5	138873090
chr5:138873577	A A	T T	1	a0002 a0002	1	HG00741.hp2 HG00741.hp2	missense_variant	MODERATE	c.984T>A c.984T>A	p.Ser328Arg p.Ser328Arg	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1408/6064	984/1551	328/516			chr5	138873577

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr5:138873064	A A	G G	1	a0001c0003 a0001c0003	2	NA18965.hp1 NA18986.hp1 NA18965.hp1 NA18986.hp1	synonymous_variant	LOW	c.1497T>C c.1497T>C	p.Asn499Asn p.Asn499Asn	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1921/6064	1497/1551	499/516	chr5	138873064
chr5:138873439	A A	G G	1	a0001c0002 a0001c0002	3	NA18989.hp1 NA19057.hp2 NA19060.hp2 NA18989.hp1 NA19057.hp2 NA19060.hp2	synonymous_variant	LOW	c.1122T>C c.1122T>C	p.Tyr374Tyr p.Tyr374Tyr	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1546/6064	1122/1551	374/516	chr5	138873439
chr5:138873592	G G	T T	1	a0001c0005 a0001c0005	1	NA18975.hp2 NA18975.hp2	synonymous_variant	LOW	c.969C>A c.969C>A	p.Ala323Ala p.Ala323Ala	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1393/6064	969/1551	323/516	chr5	138873592
chr5:138874003	C C	A A	1	a0002c0007 a0002c0007	1	HG00741.hp2 HG00741.hp2	synonymous_variant	LOW	c.558G>T c.558G>T	p.Leu186Leu p.Leu186Leu	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	982/6064	558/1551	186/516	chr5	138874003
chr5:138874333	G G	A A	1	a0001c0008 a0001c0008	1	NA19084.hp1 NA19084.hp1	synonymous_variant	LOW	c.228C>T c.228C>T	p.Leu76Leu p.Leu76Leu	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	652/6064	228/1551	76/516	chr5	138874333
chr5:138874363	C C	T T	1	a0001c0004 a0001c0004	1	NA20129.hp1 NA20129.hp1	synonymous_variant	LOW	c.198G>A c.198G>A	p.Leu66Leu p.Leu66Leu	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	622/6064	198/1551	66/516	chr5	138874363

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr5:138869173	T T	TA TA	16	a0001c0001t0013 a0001c0001t0018 a0001c0001t0020 others(13): Show a0001c0001t0013 a0001c0001t0018 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0026 a0001c0001t0030 a0001c0001t0032 a0001c0001t0034 a0001c0001t0035 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0048 a0001c0001t0057 a0001c0001t0059	27	HG01099.hp2 HG01109.hp2 HG01433.hp1 others(24): Show HG01099.hp2 HG01109.hp2 HG01433.hp1 HG01981.hp1 HG01993.hp2 HG02074.hp1 HG02280.hp2 HG02559.hp2 HG02630.hp2 HG02647.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG03239.hp1 HG03453.hp2 HG03491.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp1 NA18994.hp2 NA19000.hp2 NA19043.hp2 NA19240.hp2 NA20129.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.3836dupT c.3836dupT	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3836	chr5	138869173
chr5:138869173	T T	TAA TAA	4	a0001c0001t0005 a0001c0001t0006 a0001c0001t0031 others(1): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0031 a0001c0001t0063	39	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(36): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02258.hp2 HG02602.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp2 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3835_3836dupTT c.3835_3836dupTT	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3836	chr5	138869173
chr5:138869173	TA TA	T T	8	a0001c0001t0009 a0001c0001t0017 a0001c0001t0019 others(5): Show a0001c0001t0009 a0001c0001t0017 a0001c0001t0019 a0001c0001t0024 a0001c0001t0050 a0001c0001t0053 a0001c0002t0009 a0001c0002t0058	20	HG00621.hp2 HG00642.hp2 HG01169.hp1 others(17): Show HG00621.hp2 HG00642.hp2 HG01169.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp1 HG03195.hp2 HG03486.hp1 NA18942.hp1 NA18942.hp2 NA18946.hp1 NA18948.hp2 NA18980.hp2 NA18983.hp2 NA18986.hp2 NA18995.hp2 NA19002.hp1 NA19057.hp2 NA19060.hp2 NA19072.hp2	3_prime_UTR_variant	MODIFIER	c.3836delT c.3836delT	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3836	chr5	138869173
chr5:138869205	A A	T T	7	a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 others(4): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0030 a0001c0001t0031 a0001c0001t0063 a0001c0001t0064	47	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(44): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02258.hp2 HG02602.hp2 HG02647.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG03239.hp1 HG03453.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3805T>A c.3805T>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3805	chr5	138869205
chr5:138869272	A A	T T	1	a0001c0001t0041 a0001c0001t0041	1	HG02818.hp1 HG02818.hp1	3_prime_UTR_variant	MODIFIER	c.3738T>A c.3738T>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3738	chr5	138869272
chr5:138869374	C C	CT CT	6	a0001c0001t0009 a0001c0001t0040 a0001c0001t0050 others(3): Show a0001c0001t0009 a0001c0001t0040 a0001c0001t0050 a0001c0002t0009 a0001c0002t0055 a0001c0002t0058	13	HG03516.hp2 NA18942.hp1 NA18946.hp1 others(10): Show HG03516.hp2 NA18942.hp1 NA18946.hp1 NA18948.hp2 NA18980.hp2 NA18983.hp2 NA18986.hp2 NA18989.hp1 NA18995.hp2 NA19002.hp1 NA19057.hp2 NA19060.hp2 NA19072.hp2	3_prime_UTR_variant	MODIFIER	c.3635dupA c.3635dupA	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3635	chr5	138869374
chr5:138869374	CT CT	C C	8	a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 others(5): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0030 a0001c0001t0031 a0001c0001t0042 a0001c0001t0063 a0001c0001t0064	48	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(45): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02258.hp2 HG02602.hp2 HG02647.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG03239.hp1 HG03453.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA19087.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3635delA c.3635delA	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3635	chr5	138869374
chr5:138869459	G G	A A	1	a0001c0001t0039 a0001c0001t0039	1	HG01993.hp2 HG01993.hp2	3_prime_UTR_variant	MODIFIER	c.3551C>T c.3551C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3551	chr5	138869459
chr5:138869525	T T	C C	1	a0001c0001t0043 a0001c0001t0043	1	NA19079.hp2 NA19079.hp2	3_prime_UTR_variant	MODIFIER	c.3485A>G c.3485A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3485	chr5	138869525
chr5:138869744	G G	A A	1	a0001c0001t0040 a0001c0001t0040	1	HG03516.hp2 HG03516.hp2	3_prime_UTR_variant	MODIFIER	c.3266C>T c.3266C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	3266	chr5	138869744
chr5:138870057	T T	TATTTTTC others(15): Show TATTTTTCTGGTTCTTAATGGTC	1	a0001c0001t0044 a0001c0001t0044	1	NA18968.hp1 NA18968.hp1	3_prime_UTR_variant	MODIFIER	c.2931_2952dupGACC others(18): Show c.2931_2952dupGACCATTAAGAACCAGAAAAAT	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2952	chr5	138870057
chr5:138870187	C C	T T	5	a0001c0001t0012 a0001c0001t0023 a0001c0001t0052 others(2): Show a0001c0001t0012 a0001c0001t0023 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054	10	HG00738.hp2 HG01070.hp1 HG01109.hp1 others(7): Show HG00738.hp2 HG01070.hp1 HG01109.hp1 HG01167.hp2 HG01169.hp1 HG01192.hp2 HG01515.hp1 HG01517.hp1 HG01934.hp1 HG03927.hp2	3_prime_UTR_variant	MODIFIER	c.2823G>A c.2823G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2823	chr5	138870187
chr5:138870371	C C	A A	1	a0001c0001t0056 a0001c0001t0056	1	HG03041.hp1 HG03041.hp1	3_prime_UTR_variant	MODIFIER	c.2639G>T c.2639G>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2639	chr5	138870371
chr5:138870511	G G	T T	28	a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 others(25): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0049 a0001c0001t0059 a0001c0001t0063 a0001c0001t0064 a0002c0007t0061	87	HG00323.hp1 HG00438.hp1 HG00609.hp1 others(84): Show HG00323.hp1 HG00438.hp1 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02074.hp1 HG02129.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp2 HG02602.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02965.hp2 HG03225.hp2 HG03239.hp1 HG03453.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18747.hp1 NA18906.hp1 NA18939.hp2 NA18961.hp1 NA18968.hp1 NA18974.hp1 NA18983.hp1 NA18994.hp2 NA19043.hp2 NA19070.hp2 NA19077.hp2 NA19079.hp2 NA19085.hp2 NA19087.hp2 NA19240.hp2 NA20129.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.2499C>A c.2499C>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2499	chr5	138870511
chr5:138870612	C C	T T	1	a0001c0001t0052 a0001c0001t0052	1	HG01109.hp1 HG01109.hp1	3_prime_UTR_variant	MODIFIER	c.2398G>A c.2398G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2398	chr5	138870612
chr5:138870629	ATCTTAAT others(9): Show ATCTTAATTTTGTTTGT	A A	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.2365_2380delACAA others(12): Show c.2365_2380delACAAACAAAATTAAGA	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2365	chr5	138870629
chr5:138870786	A A	C C	1	a0001c0001t0038 a0001c0001t0038	1	HG02630.hp2 HG02630.hp2	3_prime_UTR_variant	MODIFIER	c.2224T>G c.2224T>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2224	chr5	138870786
chr5:138870944	A A	G G	1	a0001c0001t0046 a0001c0001t0046	1	NA18973.hp2 NA18973.hp2	3_prime_UTR_variant	MODIFIER	c.2066T>C c.2066T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2066	chr5	138870944
chr5:138870945	G G	A A	1	a0001c0001t0046 a0001c0001t0046	1	NA18973.hp2 NA18973.hp2	3_prime_UTR_variant	MODIFIER	c.2065C>T c.2065C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	2065	chr5	138870945
chr5:138871363	A A	G G	1	a0001c0001t0034 a0001c0001t0034	1	NA19000.hp2 NA19000.hp2	3_prime_UTR_variant	MODIFIER	c.1647T>C c.1647T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1647	chr5	138871363
chr5:138871403	C C	T T	1	a0001c0001t0040 a0001c0001t0040	1	HG03516.hp2 HG03516.hp2	3_prime_UTR_variant	MODIFIER	c.1607G>A c.1607G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1607	chr5	138871403
chr5:138871550	C C	T T	1	a0001c0001t0051 a0001c0001t0051	1	NA18948.hp1 NA18948.hp1	3_prime_UTR_variant	MODIFIER	c.1460G>A c.1460G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1460	chr5	138871550
chr5:138871583	T T	C C	1	a0001c0001t0047 a0001c0001t0047	1	NA19005.hp2 NA19005.hp2	3_prime_UTR_variant	MODIFIER	c.1427A>G c.1427A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1427	chr5	138871583
chr5:138871704	T T	C C	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.1306A>G c.1306A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1306	chr5	138871704
chr5:138871705	G G	T T	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.1305C>A c.1305C>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1305	chr5	138871705
chr5:138871706	T T	G G	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.1304A>C c.1304A>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1304	chr5	138871706
chr5:138871720	C C	A A	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.1290G>T c.1290G>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1290	chr5	138871720
chr5:138871791	A A	T T	1	a0001c0001t0036 a0001c0001t0036	1	HG02809.hp2 HG02809.hp2	3_prime_UTR_variant	MODIFIER	c.1219T>A c.1219T>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1219	chr5	138871791
chr5:138871844	G G	A A	28	a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 others(25): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0049 a0001c0001t0059 a0001c0001t0063 a0001c0001t0064 a0002c0007t0061	87	HG00323.hp1 HG00438.hp1 HG00609.hp1 others(84): Show HG00323.hp1 HG00438.hp1 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02074.hp1 HG02129.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp2 HG02602.hp2 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02965.hp2 HG03225.hp2 HG03239.hp1 HG03453.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18747.hp1 NA18906.hp1 NA18939.hp2 NA18961.hp1 NA18968.hp1 NA18974.hp1 NA18983.hp1 NA18994.hp2 NA19043.hp2 NA19070.hp2 NA19077.hp2 NA19079.hp2 NA19085.hp2 NA19087.hp2 NA19240.hp2 NA20129.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1166C>T c.1166C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1166	chr5	138871844
chr5:138871880	A A	G G	1	a0001c0001t0050 a0001c0001t0050	1	NA18995.hp2 NA18995.hp2	3_prime_UTR_variant	MODIFIER	c.1130T>C c.1130T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	1130	chr5	138871880
chr5:138872022	G G	A A	1	a0001c0001t0025 a0001c0001t0025	2	HG00597.hp2 HG02132.hp1 HG00597.hp2 HG02132.hp1	3_prime_UTR_variant	MODIFIER	c.988C>T c.988C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	988	chr5	138872022
chr5:138872027	A A	AGT AGT	10	a0001c0001t0001 a0001c0001t0023 a0001c0001t0024 others(7): Show a0001c0001t0001 a0001c0001t0023 a0001c0001t0024 a0001c0001t0028 a0001c0001t0035 a0001c0001t0046 a0001c0001t0047 a0001c0001t0060 a0001c0001t0065 a0001c0005t0001	77	HG00099.hp1 HG00408.hp1 HG00438.hp2 others(74): Show HG00099.hp1 HG00408.hp1 HG00438.hp2 HG00558.hp2 HG00621.hp2 HG00673.hp2 HG00733.hp1 HG00735.hp2 HG01069.hp2 HG01106.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp2 HG01934.hp1 HG01975.hp1 HG01993.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp2 HG02293.hp2 HG02523.hp1 HG02523.hp2 HG02615.hp1 HG02698.hp2 HG02818.hp2 HG03139.hp2 HG03471.hp2 HG03654.hp2 HG03669.hp2 HG03927.hp2 HG03942.hp1 NA18522.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18945.hp1 NA18945.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18951.hp1 NA18951.hp2 NA18954.hp1 NA18957.hp1 NA18957.hp2 NA18965.hp2 NA18968.hp2 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18989.hp2 NA18995.hp1 NA19002.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp1 NA19009.hp2 NA19043.hp1 NA19066.hp2 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2	3_prime_UTR_variant	MODIFIER	c.981_982dupAC c.981_982dupAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	982	chr5	138872027
chr5:138872027	A A	AGTGT AGTGT	4	a0001c0001t0003 a0001c0001t0010 a0001c0001t0017 others(1): Show a0001c0001t0003 a0001c0001t0010 a0001c0001t0017 a0001c0001t0018	50	HG00099.hp2 HG00558.hp1 HG00642.hp2 others(47): Show HG00099.hp2 HG00558.hp1 HG00642.hp2 HG01074.hp2 HG01081.hp2 HG01123.hp1 HG01256.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01433.hp1 HG01981.hp1 HG02004.hp2 HG02040.hp2 HG02132.hp2 HG02145.hp1 HG02602.hp1 HG02615.hp2 HG02723.hp1 HG02738.hp1 HG03669.hp1 HG03831.hp1 HG03927.hp1 HG04184.hp1 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18940.hp1 NA18940.hp2 NA18944.hp2 NA18946.hp2 NA18949.hp2 NA18954.hp2 NA18962.hp2 NA18963.hp1 NA18980.hp1 NA18993.hp1 NA19000.hp1 NA19003.hp1 NA19007.hp2 NA19054.hp2 NA19057.hp1 NA19068.hp2 NA19077.hp1 NA19078.hp1 NA19081.hp1 NA19084.hp2 NA19090.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.979_982dupACAC c.979_982dupACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	982	chr5	138872027
chr5:138872027	AGT AGT	A A	14	a0001c0001t0004 a0001c0001t0009 a0001c0001t0014 others(11): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0014 a0001c0001t0026 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0056 a0001c0002t0009 a0001c0002t0055 a0001c0002t0058 a0001c0003t0004	53	HG00733.hp2 HG00738.hp1 HG00741.hp1 others(50): Show HG00733.hp2 HG00738.hp1 HG00741.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01169.hp1 HG01257.hp1 HG01361.hp2 HG01943.hp1 HG02015.hp2 HG02109.hp1 HG02145.hp2 HG02273.hp1 HG02451.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02965.hp1 HG03041.hp1 HG03130.hp2 HG03209.hp2 HG03239.hp2 HG03579.hp1 HG03704.hp1 HG03831.hp2 HG03834.hp1 NA18522.hp1 NA18747.hp2 NA18942.hp1 NA18946.hp1 NA18948.hp1 NA18948.hp2 NA18965.hp1 NA18980.hp2 NA18983.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18995.hp2 NA19002.hp1 NA19003.hp2 NA19054.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19072.hp2 NA19081.hp2 NA19240.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.981_982delAC c.981_982delAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	981	chr5	138872027
chr5:138872027	AGTGT AGTGT	A A	5	a0001c0001t0011 a0001c0001t0019 a0001c0001t0057 others(2): Show a0001c0001t0011 a0001c0001t0019 a0001c0001t0057 a0001c0001t0066 a0001c0008t0011	11	HG00408.hp2 HG00639.hp1 HG01099.hp2 others(8): Show HG00408.hp2 HG00639.hp1 HG01099.hp2 HG01243.hp1 HG01891.hp1 HG03195.hp2 HG03486.hp1 HG03834.hp2 NA18906.hp2 NA18971.hp2 NA19084.hp1	3_prime_UTR_variant	MODIFIER	c.979_982delACAC c.979_982delACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	979	chr5	138872027
chr5:138872027	AGTGTGT AGTGTGT	A A	2	a0001c0001t0027 a0001c0001t0034 a0001c0001t0027 a0001c0001t0034	3	HG01934.hp2 HG02735.hp2 NA19000.hp2 HG01934.hp2 HG02735.hp2 NA19000.hp2	3_prime_UTR_variant	MODIFIER	c.977_982delACACAC c.977_982delACACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	977	chr5	138872027
chr5:138872027	AGTGTGTG others(5): Show AGTGTGTGTGTGT	A A	3	a0001c0001t0008 a0001c0004t0008 a0003c0006t0008 a0001c0001t0008 a0001c0004t0008 a0003c0006t0008	11	HG02257.hp1 HG02451.hp2 HG02559.hp1 others(8): Show HG02257.hp1 HG02451.hp2 HG02559.hp1 HG02622.hp2 HG02970.hp2 HG03139.hp1 HG03209.hp1 HG03453.hp1 HG03486.hp2 HG03579.hp2 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.971_982delACACAC others(6): Show c.971_982delACACACACACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	971	chr5	138872027
chr5:138872035	T T	A A	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.975A>T c.975A>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	975	chr5	138872035
chr5:138872037	T T	A A	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.973A>T c.973A>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	973	chr5	138872037
chr5:138872057	TGTGTGTG others(5): Show TGTGTGTGTGTGC	T T	7	a0001c0001t0005 a0001c0001t0013 a0001c0001t0030 others(4): Show a0001c0001t0005 a0001c0001t0013 a0001c0001t0030 a0001c0001t0031 a0001c0001t0045 a0001c0001t0062 a0001c0001t0064	34	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(31): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01074.hp1 HG01168.hp2 HG01169.hp2 HG01261.hp2 HG01346.hp2 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG02258.hp2 HG02602.hp2 HG02647.hp2 HG02698.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG03239.hp1 HG03453.hp2 HG03471.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.941_952delGCACAC others(6): Show c.941_952delGCACACACACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872057
chr5:138872059	TGTGTGTG others(3): Show TGTGTGTGTGC	T T	8	a0001c0001t0006 a0001c0001t0007 a0001c0001t0022 others(5): Show a0001c0001t0006 a0001c0001t0007 a0001c0001t0022 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044	34	HG00438.hp1 HG01070.hp2 HG01071.hp2 others(31): Show HG00438.hp1 HG01070.hp2 HG01071.hp2 HG01081.hp1 HG01167.hp1 HG01243.hp2 HG01361.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01981.hp2 HG02074.hp1 HG02129.hp1 HG02486.hp2 HG02572.hp2 HG02717.hp1 HG02735.hp1 HG02818.hp1 HG02965.hp2 HG03490.hp1 HG03516.hp2 HG03710.hp1 HG03942.hp2 HG04184.hp2 NA18747.hp1 NA18939.hp2 NA18968.hp1 NA18983.hp1 NA18994.hp2 NA19077.hp2 NA19079.hp2 NA19087.hp2 NA20805.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.941_950delGCACAC others(4): Show c.941_950delGCACACACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872059
chr5:138872061	TGTGTGTG others(1): Show TGTGTGTGC	T T	4	a0001c0001t0016 a0001c0001t0021 a0001c0001t0038 others(1): Show a0001c0001t0016 a0001c0001t0021 a0001c0001t0038 a0001c0001t0039	7	HG00609.hp1 HG01109.hp2 HG01993.hp2 others(4): Show HG00609.hp1 HG01109.hp2 HG01993.hp2 HG02630.hp2 HG03540.hp2 NA19070.hp2 NA19085.hp2	3_prime_UTR_variant	MODIFIER	c.941_948delGCACAC others(2): Show c.941_948delGCACACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872061
chr5:138872063	TGTGTGC TGTGTGC	T T	3	a0001c0001t0032 a0001c0001t0037 a0001c0001t0063 a0001c0001t0032 a0001c0001t0037 a0001c0001t0063	3	HG01978.hp2 HG02280.hp2 NA19240.hp2 HG01978.hp2 HG02280.hp2 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.941_946delGCACAC c.941_946delGCACAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872063
chr5:138872065	TGTGC TGTGC	T T	3	a0001c0001t0015 a0001c0001t0020 a0001c0001t0036 a0001c0001t0015 a0001c0001t0020 a0001c0001t0036	6	HG02723.hp2 HG02809.hp2 HG03225.hp2 others(3): Show HG02723.hp2 HG02809.hp2 HG03225.hp2 HG03540.hp1 NA18906.hp1 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.941_944delGCAC c.941_944delGCAC	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872065
chr5:138872067	T T	C C	1	a0001c0002t0058 a0001c0002t0058	1	NA19057.hp2 NA19057.hp2	3_prime_UTR_variant	MODIFIER	c.943A>G c.943A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	943	chr5	138872067
chr5:138872069	C C	T T	3	a0001c0001t0035 a0001c0001t0059 a0002c0007t0061 a0001c0001t0035 a0001c0001t0059 a0002c0007t0061	3	HG00741.hp2 HG02818.hp2 NA20129.hp2 HG00741.hp2 HG02818.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.941G>A c.941G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	941	chr5	138872069
chr5:138872402	G G	T T	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.608C>A c.608C>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	608	chr5	138872402
chr5:138872420	G G	A A	1	a0001c0001t0059 a0001c0001t0059	1	NA20129.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.590C>T c.590C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	590	chr5	138872420
chr5:138872430	A A	G G	1	a0001c0001t0034 a0001c0001t0034	1	NA19000.hp2 NA19000.hp2	3_prime_UTR_variant	MODIFIER	c.580T>C c.580T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	580	chr5	138872430
chr5:138872614	G G	A A	1	a0001c0001t0060 a0001c0001t0060	1	NA20300.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.396C>T c.396C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	396	chr5	138872614
chr5:138872679	A A	T T	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.331T>A c.331T>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	331	chr5	138872679
chr5:138872712	A A	G G	1	a0002c0007t0061 a0002c0007t0061	1	HG00741.hp2 HG00741.hp2	3_prime_UTR_variant	MODIFIER	c.298T>C c.298T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	298	chr5	138872712
chr5:138872713	C C	A A	5	a0001c0001t0008 a0001c0001t0062 a0001c0004t0008 others(2): Show a0001c0001t0008 a0001c0001t0062 a0001c0004t0008 a0002c0007t0061 a0003c0006t0008	13	HG00741.hp2 HG02257.hp1 HG02451.hp2 others(10): Show HG00741.hp2 HG02257.hp1 HG02451.hp2 HG02559.hp1 HG02622.hp2 HG02970.hp2 HG03139.hp1 HG03209.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp2 HG03579.hp2 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.297G>T c.297G>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	297	chr5	138872713
chr5:138872751	C C	T T	2	a0001c0001t0030 a0001c0001t0031 a0001c0001t0030 a0001c0001t0031	4	HG00642.hp1 HG02738.hp2 HG03239.hp1 others(1): Show HG00642.hp1 HG02738.hp2 HG03239.hp1 HG03491.hp1	3_prime_UTR_variant	MODIFIER	c.259G>A c.259G>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	259	chr5	138872751
chr5:138872752	A A	G G	7	a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 others(4): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0030 a0001c0001t0031 a0001c0001t0063 a0001c0001t0064	47	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(44): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02258.hp2 HG02602.hp2 HG02647.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG03239.hp1 HG03453.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.258T>C c.258T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	258	chr5	138872752
chr5:138872778	T T	C C	3	a0001c0001t0010 a0001c0001t0028 a0001c0001t0029 a0001c0001t0010 a0001c0001t0028 a0001c0001t0029	13	NA18940.hp2 NA18946.hp2 NA18949.hp2 others(10): Show NA18940.hp2 NA18946.hp2 NA18949.hp2 NA18954.hp2 NA18963.hp1 NA18998.hp2 NA19003.hp1 NA19004.hp1 NA19057.hp1 NA19067.hp2 NA19075.hp2 NA19081.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.232A>G c.232A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	232	chr5	138872778
chr5:138872820	A A	T T	2	a0001c0001t0014 a0001c0001t0033 a0001c0001t0014 a0001c0001t0033	4	HG02258.hp1 HG02572.hp1 HG02647.hp1 others(1): Show HG02258.hp1 HG02572.hp1 HG02647.hp1 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.190T>A c.190T>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	2/2	190	chr5	138872820
chr5:138875206	C C	A A	7	a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 others(4): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0030 a0001c0001t0031 a0001c0001t0063 a0001c0001t0064	47	HG00323.hp1 HG00639.hp2 HG00642.hp1 others(44): Show HG00323.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp2 HG01884.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG02258.hp2 HG02602.hp2 HG02647.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG03239.hp1 HG03453.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03710.hp1 HG03942.hp2 HG04184.hp2 HG06807.hp2 NA18961.hp1 NA18974.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-295G>T c.-295G>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/2		chr5	138875206
chr5:138875254	G G	A A	1	a0001c0001t0065 a0001c0001t0065	1	NA19068.hp1 NA19068.hp1	5_prime_UTR_variant	MODIFIER	c.-343C>T c.-343C>T	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/2	343	chr5	138875254
chr5:138875259	G G	T T	1	a0001c0001t0032 a0001c0001t0032	1	HG02280.hp2 HG02280.hp2	5_prime_UTR_variant	MODIFIER	c.-348C>A c.-348C>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/2	348	chr5	138875259
chr5:138875283	G G	C C	1	a0001c0001t0066 a0001c0001t0066	1	HG01891.hp1 HG01891.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-372C>G c.-372C>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/2		chr5	138875283

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr5:138874657	G G	T T	1	a0001c0001t0001g0020 a0001c0001t0001g0020	2	NA18973.hp1 NA19072.hp1 NA18973.hp1 NA19072.hp1	intron_variant	MODIFIER	c.5-101C>A c.5-101C>A	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/1	chr5	138874657
chr5:138874798	A A	C C	1	a0001c0001t0006g0071 a0001c0001t0006g0071	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.4+110T>G c.4+110T>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/1	chr5	138874798
chr5:138874814	T T	C C	4	a0001c0001t0015g0031 a0001c0001t0036g0068 a0001c0001t0038g0069 others(1): Show a0001c0001t0015g0031 a0001c0001t0036g0068 a0001c0001t0038g0069 a0001c0001t0049g0070	5	HG02486.hp1 HG02630.hp2 HG02809.hp2 others(2): Show HG02486.hp1 HG02630.hp2 HG02809.hp2 HG03225.hp2 HG03540.hp1	intron_variant	MODIFIER	c.4+94A>G c.4+94A>G	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/1	chr5	138874814
chr5:138874883	A A	G G	2	a0001c0001t0026g0019 a0001c0001t0057g0035 a0001c0001t0026g0019 a0001c0001t0057g0035	3	HG01099.hp2 NA18522.hp1 NA21309.hp2 HG01099.hp2 NA18522.hp1 NA21309.hp2	intron_variant	MODIFIER	c.4+25T>C c.4+25T>C	LRRTM2	ENSG00000146006.8	transcript	ENST00000274711.7	protein_coding	1/1	chr5	138874883

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🧬 JoGo Online Haplotype Explorer LRRTM2_chr5_138863921_138880335

JoGo Local Haplotype Explorer (on iGV) LRRTM2_chr5_138863921_138880335

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 66)

GGenebody Level Haplotype Info (Total: 75)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 72)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 75)

Haplotype Details by Sample (Haploid Level) (Total: 364)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 6)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 61)

GGenebody Level Haplotype Variants (Intron) (Total: 4)

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Annotation (Repeats)

Annotation (SNP Array)