JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRTM2_chr5_138863921_138880335	0/0	t0039	4507	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0040	4505	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0041	4504	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0042	4503	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0043	4504	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0044	4526	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0045	4502	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0046	4516	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0047	4516	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0048	4515	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0049	4514	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0050	4512	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0051	4512	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0052	4512	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0053	4511	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0054	4512	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0055	4513	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0056	4512	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0057	4511	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0058	4512	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0059	4515	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0060	4516	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0061	4498	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0062	4502	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0063	4509	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0064	4501	1	0	1	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0065	4516	1	0	0	1	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM2_chr5_138863921_138880335	0/0	t0066	4510	1	1	0	0	0	0	copy fasta	LRRTM2	chr5	138863921	138880335
LRRTM3_chr10_66921036_67106551	0/0	t0001	4305	128	49	14	45	5	15	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0002	4304	91	4	29	40	7	11	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0003	4305	21	15	5	0	0	1	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0004	4302	15	1	2	12	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/1	t0005	4304	7	1	2	0	0	3	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	1/0	t0006	4304	7	3	1	0	1	1	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0007	4306	4	4	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0008	4302	3	1	0	2	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0009	4305	2	2	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0010	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0011	4306	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0012	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0013	4304	1	0	0	1	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0014	4220	1	0	0	1	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0015	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0016	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0017	4305	1	0	0	0	1	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0018	4305	1	0	0	1	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0019	4305	1	0	0	0	0	1	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0020	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0021	4304	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0022	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551