JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRRTM3_chr10_66921036_67106551	0/0	t0023	4305	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0024	4304	1	1	0	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM3_chr10_66921036_67106551	0/0	t0025	4305	1	0	1	0	0	0	copy fasta	LRRTM3	chr10	66921036	67106551
LRRTM4_chr2_76742685_77527376	0/0	t0001	1426	47	21	3	17	1	5	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0002	1426	39	16	7	9	1	6	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0003	1426	20	12	1	5	0	2	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0004	1427	12	0	5	3	0	4	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0005	1427	2	2	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0006	1426	2	2	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0007	1427	1	1	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0008	1426	1	1	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0009	1426	1	1	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0010	1426	1	1	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0011	1425	1	1	0	0	0	0	copy fasta	LRRTM4	chr2	76742685	77527376
LRRTM4_chr2_76742685_77527376	0/0	t0012	1426	1	0	0	0	0	1	copy fasta	LRRTM4	chr2	76742685	77527376
LRSAM1_chr9_127446510_127508499	1/1	t0001	949	333	82	65	134	16	34	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	t0002	949	4	4	0	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	t0003	949	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	t0004	899	1	0	0	1	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRSAM1_chr9_127446510_127508499	0/0	t0005	949	1	0	1	0	0	0	copy fasta	LRSAM1	chr9	127446510	127508499
LRTM1_chr3_54913231_54933059	0/0	t0001	372	149	11	35	79	9	15	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	1/1	t0002	377	62	4	11	28	4	13	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0003	377	33	14	2	9	1	7	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0004	378	12	2	6	1	1	2	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0005	381	10	5	4	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0006	371	9	9	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0007	377	8	2	0	6	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0008	378	7	7	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0009	373	5	1	1	0	0	3	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0010	373	5	3	2	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0011	378	5	5	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0012	378	5	1	2	1	1	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0013	377	4	2	0	1	0	1	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0014	378	4	3	1	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0015	377	4	4	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0016	379	3	3	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0017	377	3	2	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0018	372	3	1	2	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0019	379	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0020	379	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0021	377	2	2	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0022	372	1	0	0	0	0	1	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0023	371	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0024	377	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0025	377	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0026	378	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0027	378	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0028	377	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0029	371	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0030	371	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059