JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LRTM1_chr3_54913231_54933059	0/0	t0031	378	1	1	0	0	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM1_chr3_54913231_54933059	0/0	t0032	372	1	0	0	1	0	0	copy fasta	LRTM1	chr3	54913231	54933059
LRTM2_chr12_1815565_1841753	0/1	t0001	2541	124	3	6	99	4	11	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0002	2541	117	13	26	60	0	18	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	1/0	t0003	2541	44	25	11	2	2	3	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0004	2541	25	6	11	3	1	4	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0005	2541	22	21	0	0	1	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0006	2541	10	4	4	0	0	2	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0007	2541	9	0	1	8	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0008	2541	8	1	0	7	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0009	2541	8	0	0	8	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0010	2541	8	0	2	0	3	3	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0011	2541	7	6	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0012	2541	6	0	0	6	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0013	2541	5	0	5	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0014	2541	4	3	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0015	2541	4	0	3	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0016	2541	3	2	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0017	2537	3	0	0	3	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0018	2541	2	0	0	2	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0019	2541	2	0	1	0	1	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0020	2541	2	1	0	0	1	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0021	2541	2	0	0	2	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0022	2541	2	1	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0023	2547	2	0	2	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0024	2547	2	2	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0025	2541	2	1	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0026	2541	2	2	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0027	2541	2	0	0	0	0	2	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0028	2539	2	0	2	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0029	2539	2	0	0	0	2	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0030	2541	2	2	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0031	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0032	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0033	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0034	2541	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0035	2541	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0036	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0037	2541	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0038	2541	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0039	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0040	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0041	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0042	2541	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0043	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0044	2541	1	0	1	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0045	2541	1	1	0	0	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0046	2541	1	0	0	0	0	1	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0047	2541	1	0	0	1	0	0	copy fasta	LRTM2	chr12	1815565	1841753
LRTM2_chr12_1815565_1841753	0/0	t0048	2541	1	0	0	0	1	0	copy fasta	LRTM2	chr12	1815565	1841753