JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LSP1_chr11_1848084_1897263	0/0	t0010	566	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSR_chr19_35244002_35272964	1/1	t0001	127	435	98	76	199	14	46	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	t0002	127	2	0	0	2	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	t0003	127	1	0	0	1	0	0	copy fasta	LSR	chr19	35244002	35272964
LSS_chr21_46183446_46233774	0/0	t0001	2688	151	30	20	82	5	14	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	1/0	t0002	2688	82	5	19	36	6	15	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/1	t0003	2688	28	3	10	7	2	5	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0004	2688	18	9	7	0	1	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0005	1558	13	13	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0006	2688	10	0	0	3	0	7	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0007	2687	8	7	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0008	2687	7	2	2	0	0	3	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0009	2688	5	5	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0010	2702	4	0	3	0	1	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0011	2688	4	3	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0012	2688	4	4	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0013	2688	3	0	0	3	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0014	2688	3	3	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0015	2688	2	1	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0016	2688	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0017	2688	2	0	1	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0018	2688	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0019	2687	1	0	0	0	1	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0020	2687	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0021	2688	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0022	2688	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0023	2688	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0024	2688	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0025	2688	1	1	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0026	2688	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0027	2688	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0028	2688	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	t0029	2688	1	0	0	1	0	0	copy fasta	LSS	chr21	46183446	46233774
LST1_chr6_31581277_31593909	0/0	t0001	373	295	62	57	141	15	20	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/1	t0002	373	76	17	19	20	2	17	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	t0003	373	51	2	2	37	1	9	copy fasta	LST1	chr6	31581277	31593909
LST1_chr6_31581277_31593909	0/0	t0004	373	1	1	0	0	0	0	copy fasta	LST1	chr6	31581277	31593909
LTA4H_chr12_95995753_96040587	1/1	t0001	305	361	92	62	149	16	40	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	t0002	305	1	1	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	t0003	305	1	0	0	1	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA4H_chr12_95995753_96040587	0/0	t0004	305	1	1	0	0	0	0	copy fasta	LTA4H	chr12	95995753	96040587
LTA_chr6_31567289_31579324	0/0	t0001	799	151	36	25	71	4	15	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	t0002	799	143	18	27	81	5	12	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/1	t0003	799	98	20	21	37	5	14	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	t0004	799	9	1	4	1	3	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	t0005	799	3	2	1	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	t0006	799	2	0	0	0	1	1	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	t0007	799	1	1	0	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTB4R2_chr14_24305140_24317038	1/1	t0001	424	389	78	67	181	16	45	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	t0002	424	7	7	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038