JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAB21L4_chr2_240881048_240901156	0/0	t0005	1182	20	6	10	0	2	2	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0006	1184	16	14	2	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0007	1182	7	6	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0008	1182	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0009	1182	2	0	2	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0010	1182	1	1	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0011	1182	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MACC1_chr7_20129655_20222384	0/0	t0001	6594	27	3	7	13	1	3	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0002	6595	19	0	2	14	0	3	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/1	t0003	6593	18	1	3	6	3	4	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0004	6590	15	0	2	9	1	3	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0005	6577	13	0	7	5	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0006	6591	12	1	8	0	1	2	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0007	6596	10	0	3	7	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0008	6597	10	0	4	6	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0009	6590	9	6	1	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0010	6594	7	0	0	7	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0011	6568	6	6	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0012	6595	5	1	2	1	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	1/0	t0013	6595	5	4	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0014	6585	5	5	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0015	6592	4	1	1	1	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0016	6568	4	4	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0017	6588	4	2	0	0	0	2	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0018	6594	4	2	2	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0019	6596	4	0	0	3	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0020	6567	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0021	6576	3	2	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0022	6578	3	0	2	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0023	6587	3	1	0	0	1	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0024	6591	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0025	6598	3	0	2	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0026	6600	3	0	1	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0027	6581	3	1	1	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0028	6567	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0029	6586	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0030	6571	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0031	6581	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0032	6592	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0033	6595	2	0	0	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0034	6569	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0035	6590	2	0	1	0	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0036	6592	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0037	6591	2	0	1	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0038	6594	2	0	0	0	0	2	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0039	6592	2	0	0	1	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0040	6593	2	1	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0041	6582	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0042	6596	2	0	0	0	0	2	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0043	6598	2	1	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384