JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MACC1_chr7_20129655_20222384	0/0	t0044	6599	2	0	1	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0045	6600	2	0	0	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0046	6580	2	0	1	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0047	6568	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0048	6569	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0049	6570	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0050	6569	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0051	6585	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0052	6577	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0053	6576	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0054	6578	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0055	6586	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0056	6593	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0057	6596	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0058	6596	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0059	6596	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0060	6597	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0061	6584	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0062	6597	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0063	6569	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0064	6569	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0065	6569	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0066	6568	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0067	6562	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0068	6563	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0069	6580	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0070	6573	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0071	6587	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0072	6545	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0073	6545	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0074	6586	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0075	6588	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0076	6611	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0077	6598	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0078	6596	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0079	6592	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0080	6592	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0081	6593	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0082	6594	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0083	6596	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0084	6588	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0085	6593	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0086	6591	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0087	6594	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0088	6594	1	0	0	0	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0089	6591	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0090	6590	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0091	6591	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0092	6594	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0093	6594	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384