JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MACC1_chr7_20129655_20222384	0/0	t0094	6619	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0095	6595	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0096	6596	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0097	6596	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0098	6595	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0099	6594	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0100	6592	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0101	6597	1	0	0	0	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0102	6597	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0103	6598	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0104	6598	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0105	6597	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0106	6597	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0107	6599	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0108	6599	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0109	6591	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0110	6591	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0111	6595	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0112	6593	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0113	6596	1	0	0	0	1	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0114	6595	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0115	6590	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0116	6583	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0117	6592	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0118	6607	1	0	0	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	t0119	6564	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACF1_chr1_39199695_39492138	1/1	t0001	1673	183	59	36	62	5	19	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0002	1672	34	0	3	29	1	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0003	1673	15	14	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0004	1673	4	0	0	4	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0005	1673	3	3	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0006	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0007	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0008	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0009	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0010	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0011	1673	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	t0012	1672	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACIR_chr5_103253763_103283660	1/0	t0001	2368	172	18	36	86	7	24	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/1	t0002	2368	137	48	18	60	1	9	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0003	2367	9	8	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0004	2367	7	7	0	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0005	2368	7	0	2	0	3	2	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0006	2367	6	6	0	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0007	2367	3	2	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0008	2368	2	0	1	0	0	1	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0009	2368	2	0	0	2	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0010	2368	2	1	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0011	2368	2	1	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0012	2368	2	2	0	0	0	0	copy fasta	MACIR	chr5	103253763	103283660