JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MANEAL_chr1_37788847_37806133	1/1	t0001	1267	313	71	46	148	11	35	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0002	1263	96	4	23	59	3	7	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0003	1267	7	6	1	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0004	1267	6	6	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0005	1267	6	0	0	6	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0006	1267	3	3	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0007	1267	2	0	0	2	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0008	1267	2	2	0	0	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0009	1267	1	0	0	0	0	1	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0010	1267	1	0	0	1	0	0	copy fasta	MANEAL	chr1	37788847	37806133
MANEAL_chr1_37788847_37806133	0/0	t0011	1267	1	0	0	0	0	1	copy fasta	MANEAL	chr1	37788847	37806133
MANEA_chr6_95572535_95614452	0/0	t0001	3186	82	19	8	48	0	7	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	1/0	t0002	3190	69	3	30	28	2	5	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0003	3190	60	1	13	34	3	9	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0004	3190	57	15	4	31	2	5	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/1	t0005	3190	41	14	5	14	3	4	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0006	3190	32	6	9	15	1	1	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0007	3188	15	9	4	0	2	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0008	3190	14	6	0	7	0	1	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0009	3190	8	0	0	8	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0010	3190	5	5	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0011	3186	3	3	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0012	3190	3	3	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0013	3186	3	0	0	3	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0014	3190	2	1	0	0	1	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0015	3190	2	2	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0016	3190	2	0	0	2	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0017	3190	2	0	0	2	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0018	3190	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0019	3186	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0020	3186	1	0	0	1	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0021	3190	1	0	0	1	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0022	3190	1	0	0	1	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0023	3190	1	0	1	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0024	3190	1	1	0	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0025	3190	1	0	1	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0026	3190	1	0	1	0	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANEA_chr6_95572535_95614452	0/0	t0027	3190	1	0	0	1	0	0	copy fasta	MANEA	chr6	95572535	95614452
MANF_chr3_51380291_51394397	1/0	t0001	361	308	61	48	155	9	34	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0002	361	30	1	11	12	3	3	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0003	355	13	10	3	0	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0004	358	9	2	2	3	2	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0005	367	8	0	2	6	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/1	t0006	358	6	1	2	1	0	1	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0007	364	3	0	0	3	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0008	370	3	0	0	3	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0009	364	1	0	0	1	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0010	361	1	1	0	0	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0011	361	1	1	0	0	0	0	copy fasta	MANF	chr3	51380291	51394397
MANF_chr3_51380291_51394397	0/0	t0012	361	1	1	0	0	0	0	copy fasta	MANF	chr3	51380291	51394397