JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MANSC1_chr12_12321056_12355242	0/0	t0001	4244	30	0	9	14	1	6	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0002	4243	27	0	3	23	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0003	4244	20	0	3	16	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0004	4242	12	0	2	7	2	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0005	4246	10	4	0	6	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0006	4234	8	0	4	0	3	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0007	4246	7	0	0	7	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0008	4242	7	0	0	7	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0009	4240	6	0	2	4	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0010	4245	6	2	0	4	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0011	4242	5	0	0	4	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0012	4244	5	0	4	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/1	t0013	4246	5	0	3	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0014	4241	5	0	2	2	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0015	4244	5	0	1	3	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0016	4237	5	0	2	3	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0017	4242	4	0	1	3	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0018	4242	4	0	2	1	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0019	4248	4	1	1	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0020	4237	4	0	4	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0021	4242	4	0	0	3	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0022	4242	3	0	0	3	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0023	4245	3	3	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0024	4227	3	3	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0025	4247	3	0	0	3	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0026	4239	2	1	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0027	4240	2	0	2	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0028	4242	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0029	4244	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0030	4246	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0031	4248	2	0	0	1	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0032	4241	2	0	2	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0033	4243	2	2	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0034	4246	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0035	4242	2	2	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0036	4243	2	0	1	0	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0037	4248	2	0	1	0	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0038	4227	2	0	2	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0039	4242	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0040	4248	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0041	4243	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0042	4238	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0043	4240	2	0	0	2	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0044	4244	2	0	0	0	0	2	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0045	4246	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0046	4244	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0047	4235	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0048	4237	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0049	4236	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0050	4235	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242